Pseudoalteromonas spongiae: PSPO_a0583
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Entry
PSPO_a0583 CDS
T05098
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPO_a0583 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspo03019
]
PSPO_a0583 (pcnB)
Enzymes [BR:
pspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
PSPO_a0583 (pcnB)
Messenger RNA biogenesis [BR:
pspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSPO_a0583 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
ATC97783
LinkDB
All DBs
Position
I:complement(567797..569086)
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AA seq
429 aa
AA seq
DB search
MVSRKQLSPNALKVLYRLKDAGYDAYLVGGCIRDILLGLEPKDFDVVTNATPEQIKKQFR
NCRLIGRRFRLAHIMFGREIIEVATMRGHHSDEEQGEKNKSQASEQGQLLRDNVYGTIDE
DAERRDFSINALYYSINDFSIHDFAGGMEAIKNRRIELIGDPETRYREDPVRMLRAVRFA
TKLDMTIAPATEKPMFQLASLLGNIPAARLFEEMLKLFLNGKAEANFHLLRQYGLFTYLF
PALDKLLNKHPDGTEYQLVTQVLKNTDKRINAGKKVTPAYLIAAFLWYPLQSLANRITAQ
GETPFNAFNMAMNQILSESAKSLAVPKRFTIGAREIWQLQHRFDKRGGQRAFRLTQQPRF
RAAKDFFCLRAQFEPELAELAKWWDNYTEQDAGSQKRMVSDLNKGAKSGGNYRRRRPRKA
KSNNAKRHD
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
gtggtatcgcgtaaacaacttagcccaaatgccttaaaagtactgtatcgtcttaaagat
gctggctacgacgcctatttagttggcggctgtattcgcgatattttacttggcctagaa
ccgaaagactttgatgtagttaccaatgctacacccgagcagattaaaaagcagtttcgc
aattgtcgtttaatcggtcgccgctttcgcttagcgcatatcatgtttggcagagagatc
attgaagtggcaaccatgcgaggccatcacagtgatgaagaacagggcgaaaaaaataaa
agccaagcaagcgagcaaggacaattactacgtgacaacgtttacggcactatcgacgaa
gatgcagagcgccgtgacttttcaatcaacgcgttgtactactcgattaacgatttcagt
attcatgattttgccggtggtatggaagcgattaaaaatcgccgtatcgaactgattggc
gatcctgaaacgcgctaccgtgaagatccggtacgtatgctgcgagcggtacgctttgcc
acaaaactggatatgaccattgcgccagcgacagaaaaaccgatgtttcagttggcgtcg
ctgcttggtaatattccagcagcccgtttatttgaagagatgttaaagctattcttaaac
ggtaaagcagaagctaacttccacttactgcgtcagtacgggttatttacttatttattt
cctgcacttgataaattactgaacaagcacccagacggcactgagtatcagcttgttacg
caagtattgaaaaataccgacaaacgcattaatgcaggcaaaaaagtaaccccggcctat
ttaatcgcagcatttttatggtacccattacaaagcttagccaaccgcattacagcgcag
ggcgaaacaccatttaatgcatttaatatggcgatgaatcaaattttatctgaaagtgca
aagtcgcttgcagtaccaaaacgtttcaccattggcgctcgtgagatttggcaattgcaa
caccgctttgataaacgtggcggtcaacgcgcattccgtttaacgcagcaaccgcgtttt
cgtgccgcaaaagatttcttctgtttacgcgcgcaatttgagccagaactggcagagctt
gcaaagtggtgggataactacacagagcaagatgctggcagccaaaaacgtatggttagc
gatttaaataaaggcgctaaaagtggtggcaattaccgtcgccgcagaccacgcaaagca
aaaagtaataacgcaaaacgccatgactaa
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