Pseudoalteromonas spongiae: PSPO_a0640
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Entry
PSPO_a0640 CDS
T05098
Symbol
truD
Name
(GenBank) tRNA pseudouridine13 synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
pspo
Pseudoalteromonas spongiae
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pspo03016
]
PSPO_a0640 (truD)
Enzymes [BR:
pspo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
PSPO_a0640 (truD)
Transfer RNA biogenesis [BR:
pspo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PSPO_a0640 (truD)
Prokaryotic type
PSPO_a0640 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
DUF7042
Motif
Other DBs
NCBI-ProteinID:
ATC97835
LinkDB
All DBs
Position
I:615076..616116
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AA seq
346 aa
AA seq
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MDNLSYLYGKPNSTAEFKTSAEDFRVDEELGFELSGSGEHVCLQVIKKGENTQYIAKQIA
KIAGTQARNVSYPGLKDRNAVTSQWFSVPVPIKKHIDFSALNSDSVRVLQQVRHNRKLKT
GCHKANRFTITLRRCSMVEDILTRINAVRQGVPNYFGAQRFGHDGHNLTLAEQLFSGKEI
HDRKLRGIVISAARSHIFNQIVSQRIAQYGIAKTMVEEVFLLDGSNAFFKERISLETVNR
LACGDIHLSAPLVGKGEQGVTELEKKWLAPFASWHENLSQLGLKAERRNMRLYPEKFEVL
EVTQDMIEFSFSLPKGCFATAVLRELAECQDVSLKNKDNNENLAEQ
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggataacttaagttatttatacggcaaacctaattcaaccgccgaatttaaaaccagt
gctgaagatttccgagtagatgaagaactcggttttgagcttagcggaagtggcgagcat
gtatgtttacaggtaataaagaagggagaaaatacccaatatattgccaagcaaatcgct
aaaatagcgggtacgcaagctcgcaatgtaagttaccctggtttaaaagaccgaaatgca
gtgacatcgcaatggtttagtgtaccggtgccgattaaaaagcacatcgacttttcagcg
ctgaatagcgacagtgtgagagtacttcagcaagttaggcataatcgaaagttaaaaaca
ggttgccataaagcgaaccgttttacgattacgcttagacgctgcagtatggttgaggac
attttgacacgcattaatgcggttcgccagggtgtgcctaattattttggtgcacagcgt
tttggtcatgatggacacaacttaacgctggcagagcagttgttctcaggtaaagaaatc
cacgatcgtaagctgcgtggcattgttatttcagctgcacgctctcatatctttaatcaa
attgtaagccaacgtattgcgcaatatggtattgcaaaaaccatggtagaagaagtgttc
ctactagatggtagtaatgcattttttaaagagcgtattagccttgaaacagtcaatcgt
ttggcttgtggagatattcacttatcggcacctttggttggtaaaggcgagcagggcgtt
acagagcttgaaaaaaagtggttagcaccattcgccagctggcatgaaaacctttcacaa
cttggccttaaagctgaacgcagaaatatgcgactttaccctgaaaaatttgaagtgctc
gaagtcacgcaagatatgatagagtttagttttagtttgccgaaagggtgttttgcaacg
gccgtactgcgtgagcttgcagagtgccaagatgtttctttaaagaataaggataataat
gaaaatcttgctgagcaatga
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