Pseudoalteromonas spongiae: PSPO_a1196
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Entry
PSPO_a1196 CDS
T05098
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03030
DNA replication
pspo03430
Mismatch repair
pspo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSPO_a1196 (dnaQ)
03430 Mismatch repair
PSPO_a1196 (dnaQ)
03440 Homologous recombination
PSPO_a1196 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspo03032
]
PSPO_a1196 (dnaQ)
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a1196 (dnaQ)
Enzymes [BR:
pspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSPO_a1196 (dnaQ)
DNA replication proteins [BR:
pspo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSPO_a1196 (dnaQ)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSPO_a1196 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
RNase_H_2
vATP-synt_AC39
Motif
Other DBs
NCBI-ProteinID:
ATC98314
LinkDB
All DBs
Position
I:1121114..1121830
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AA seq
238 aa
AA seq
DB search
MAHRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYIDPERDIEDEAIFVHG
ITRDFLAGKPKFRDVAAEFLDYIKGGELVIHNAAFDVGFMDHEFALLRQNYPKTHDVCQV
LDTLAMARDLHPGQKNNLDALCRRYDIDNSKRTLHGALLDSEILADVYLGMTGGQVSLNL
ANKEGQSGDNSKGIRRLSPDRPRLNVVFADNEEQAAHLERLNLVNDKGGHCLWLTEDA
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atggctcacaggcaaatagtactggatactgaaacaacgggtatcgaccctaagcaaggg
caccgcattattgaaatcggctgtgttgaattagtaaaccgtaggctcaccggaaataac
tttcacgtttacattgatccagagcgagatattgaagacgaggcgatctttgtacacggt
attacacgcgactttcttgcgggcaaacctaagtttcgcgatgtcgcggcagagttttta
gattatatcaaaggcggtgagctggtcattcataatgcagcgttcgacgttggctttatg
gatcatgaatttgcgctgcttagacaaaattaccccaaaacccacgacgtttgccaagta
cttgatacccttgcgatggcgcgtgatttacacccggggcaaaaaaataacctcgacgcc
ttatgtcgccgctacgatatagataactcaaaacgtacactgcacggcgctttactcgat
tcagagatattggctgatgtgtatttaggcatgacgggtggtcaagtaagccttaacctt
gccaataaagaagggcaaagtggtgataacagtaaaggtattcgccgactttcgccagat
agacctcgactaaacgtcgtatttgccgataacgaagaacaagcggcacacttagagcgc
ttaaatttagttaatgataaaggtggccactgcctttggcttactgaggacgcataa
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