Pseudoalteromonas spongiae: PSPO_a1285
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Entry
PSPO_a1285 CDS
T05098
Name
(GenBank) ATP-dependent helicase IRC3
KO
K19789
DNA repair protein RadD
Organism
pspo
Pseudoalteromonas spongiae
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a1285
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
PSPO_a1285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA
AAA_22
AAA_30
SLFN-g3_helicase
DZR
ATPase_2
AAA_16
DUF4154
zf-tcix
zinc_ribbon_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ATC98391
UniProt:
A0A290T496
LinkDB
All DBs
Position
I:1204151..1205884
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AA seq
577 aa
AA seq
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MAYQLRPYQQEAVEKTLAHFRKSNHSAVIVLPTGSGKSLVIAELARLARKKILVVTHVKE
LVEQNHEKYESFGLKASIYSAGLKQKSLAHQVTFASVQSLGQNLDALNDEYSLVIIDECH
RVSGDDNSQYQKLISHIKGKNSELKVLGLTATPYRLGLGFIYRFHYHGFVRGDGNAPFEH
CIYELPLRYMIKHQYLTPPKLINAAITHYDFDSLSKDAFGRFSERDLNQLLQENQRATKA
IINQVLELSDSCQGVMIFASTIQHAQEIIEYLPKTQSALVIGDTHNAERDAIIRRFKAKD
IKYLVNVSVLTTGFDAPHVDFIAILRPTESVSLYQQIVGRGLRLAEGKTECLVIDYAANG
FDLFHPEVGSVKPNSDSEPVQVLCPGCGFANTFWGKTDSDGKVIEHFGRRCQGILEDEGH
SEQCDFRFRYKECEQCGAQNDIAARLCHQCHQPIVDPDDKLRDALNLKNALVLRVSGMQL
EAHNQRLKVTYHDEDGADVSEYFSLSSDKASFYFKRQFLRVGVPSKIDFSNPNSVVTHQS
LLKVPDFVVAKRDKGKHKVVERIFDYQGQFRKAHELR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtggcctatcaattaagaccttatcagcaagaagcggttgaaaaaaccttagctcacttt
cgcaaaagcaatcactcagcggttattgtattacccacagggtcagggaaaagtttagta
attgccgaactcgcgcgtcttgcacgtaaaaaaatattggtggtgacacatgttaaagag
cttgtggagcaaaaccatgaaaaatatgaaagttttggcttaaaagcgagtatttattcg
gcagggcttaaacaaaagtcgcttgcacaccaggttacctttgctagcgttcagtcactt
gggcaaaaccttgatgcgctaaatgacgagtattcattggtaattatcgatgaatgtcac
cgcgtctctggcgatgataattcacaatatcaaaagttgattagccatataaaagggaag
aactctgagttaaaagtgctgggtttaaccgctacaccgtatcgtttaggacttggtttt
atttatcgttttcattaccacggctttgtaaggggagatggaaatgccccgtttgaacat
tgcatttatgaactgccattaaggtatatgattaagcatcaataccttacgccaccaaaa
ttaatcaatgccgcaatcacgcactatgactttgattcactcagtaaagatgcgtttggg
cgttttagcgaacgtgatctcaaccaactgctgcaagaaaatcagcgtgcaactaaagcg
attattaatcaggtgcttgagctatctgactcgtgtcagggtgtgatgatttttgcttca
accattcaacacgcacaagagatcattgaatatttaccaaaaacgcaaagtgcgctggtg
attggtgatacccataacgctgaacgcgatgcaattattcgtcgatttaaagcaaaagac
attaaatatttggtgaatgtatcagtactcactacaggctttgatgcaccgcatgtggat
tttatcgctattttaaggccaaccgagtcggttagtttgtatcaacaaatcgttggtcgg
ggtttacgcctcgctgaaggtaaaaccgaatgcttggtcattgattatgccgctaatggc
tttgatttatttcaccccgaggttggcagcgttaaacctaatagtgacagcgaacccgtg
caggtgctgtgccccggttgtggttttgctaacaccttttggggcaaaaccgatagtgat
ggcaaagtaatagagcattttggtcgtcgttgtcaagggatcttagaagacgaggggcat
agcgagcagtgtgactttcgctttcgctataaagaatgtgagcagtgtggcgcacaaaat
gatattgccgcgaggctgtgtcatcagtgccatcaacctattgttgatcctgatgataag
ttacgtgatgcgcttaatttaaaaaatgcgttggtattgcgtgtcagtggcatgcagtta
gaagcacataatcagcgactgaaagtgacttatcatgatgaagatggtgcagacgtgagc
gaatactttagtttatcgtcagacaaagcgtcgttttattttaaacggcagtttttgcgc
gtgggtgttcccagtaaaattgatttttctaaccctaactcagtcgttactcatcaatca
ttgctaaaggtgccggactttgtggttgcaaaacgagacaaaggtaaacataaagtggta
gagcgaatttttgactaccaagggcaatttaggaaagcacatgagttaagataa
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