Pseudoalteromonas spongiae: PSPO_a1418
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Entry
PSPO_a1418 CDS
T05098
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSPO_a1418 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a1418 (recC)
Enzymes [BR:
pspo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSPO_a1418 (recC)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSPO_a1418 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ATC98502
LinkDB
All DBs
Position
I:1330044..1333325
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AA seq
1093 aa
AA seq
DB search
MLHIIQSNRMEALQLHLSQSLMHSPNPSIFNKEQVLVQSPGMAQWLKVLIAEQHGVTGQI
DYVLPSSYIWRLYQSLLSDVPQESSFNKNNMAWKLFNILPNCLEQAEFALLKQYLVDTQT
ALDNDTRLFSLCEKIADAFDQYLMYRPVWLESWQQGDDELADVDISIAPWQPILWRKLVE
HTKTLGQNPYHRANLHQDLIASLNQNAINLSHQNLYIFGLSAIPSQQLEVFQALAKHIDV
YIYLCNPSKHYWGDVVDEKTKAKIIANYDVKPNIDAEGEDYYIVGNPLLASWGKLGREYL
EQLVELDAQWTDIFIEAFDENLLGQLQQEIFELAFKGMPLASDPTWFVSDEGKLTYSENK
GYSSFQFARCHNALREVEALHDHLLNLFSADDSLSPRDIIVMMPDSGQYSPYIEAVFGSA
KDNRYIPFAISDLGVEQEKPIVNSFIKLADLGACRFYVSDILDLLQVDEISTKFEISSEE
LNQIGYWLEQVNIRWGIDGEHKGEFNQPKIAINSWRQGLSRLILGFASKDENTEFNQLFA
ADQVEGMAVETLAKLIRFFDALEQTQKELKASGNLADKVKQLQQLTMRFYASDISQNNDL
GFVQKALEHVLQHFENNDHTGAVSQVLMVHILKQQLMQKGVGQRFFMGQVNFCTLMPMRA
VPFKVVCILGLNDGDYPRTVQPLGFDLLQHSKPQKGDRSRKMDDRYLFLEAILSAREHLY
LSYIGNSCVDNSERLPSVLVSELTDYLSRVFEHGKDRLIESLTVRHYLQPFNPAYYQQSH
LQSYNPIWLPKQTPATGQNEPLVADIDTQVDLALFIQQLLAPQQSFYRSTIGARLGDYQF
NNQDDETFALDGLTRYRYLQEIIERDYLSNAPNLAAIIARGDLPQGAGAELAFDNMVNTV
EPLLMELKRHQIITGDETPIESTRVDLSLSMLRISGALKPVSLATQYLYRPTAKLKAKDK
IAGYLYHLAGSASGDVNSTVFLSLDGYIEYQQLNQDEALSQLEKWGELYLCMFTRPLPLF
ATTGFSYLQKRDFAAAENTFSGASFVGQNELSDPYIALDFTSLESVAEEFIELTETYLAP
IDAIITEHKYAKS
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgctgcatattattcaatcaaaccgtatggaagcgcttcagcttcacttatctcagtcg
ctgatgcacagccccaatccgagcatttttaataaagaacaagtattggtgcaatcaccc
ggtatggcgcagtggctaaaagtgttgattgccgagcagcatggtgtcactgggcaaatc
gattatgtgttgccttcaagttatatttggcgtttatatcaaagcttgttgtcagatgtg
ccacaagaatcgtcatttaacaaaaataatatggcgtggaagctatttaatattttacct
aattgtttagaacaagcggaatttgcactgttaaaacagtacttggtggatacgcaaaca
gcgctcgataacgatacgcgattatttagtttgtgcgaaaaaattgccgatgcctttgac
caatatttaatgtatcgaccagtctggttagagagctggcagcagggcgatgacgaactt
gccgatgtcgatatatcaattgcaccgtggcagcccatattatggcgaaaactagttgag
catacgaaaacacttggacaaaacccatatcaccgtgcgaatctgcatcaagatttaatt
gcatctctaaaccaaaatgcaattaatttatctcatcaaaatttatacatatttggcttg
tctgccattcccagtcagcaacttgaagtgtttcaggcattagccaagcatattgatgtg
tacatttatttatgtaacccaagtaaacactactggggcgatgtggttgatgaaaaaacc
aaagcgaaaattattgccaattatgacgttaaaccaaatattgatgccgaaggcgaggac
tattacattgtaggtaatccacttttggcatcatggggtaaactagggcgcgaatattta
gagcagctggtggaattagatgcacagtggactgatatatttattgaagcgtttgatgag
aatttactgggtcaattacaacaggaaatttttgaattagcgtttaaaggcatgccgctt
gctagtgacccaacttggtttgtatcagatgagggcaagttaacttatagtgaaaacaaa
ggctattcgtcgtttcagtttgcgcgctgccataatgcacttagagaagtagaagcgctg
cacgaccatttgttgaacttatttagtgctgacgatagcttatcaccgcgcgatattatt
gtgatgatgcctgattcgggacagtacagcccatatattgaggcggtatttggcagtgca
aaagacaaccgttacattccatttgcgatttctgacttaggtgttgagcaagaaaaacca
atcgtaaacagctttattaaacttgctgatttaggcgcgtgccgtttttatgtatctgat
attttggacttattacaagttgacgaaatctcaacaaagtttgaaatttcgagcgaagaa
ctcaatcaaattggttattggttagagcaggttaatattcgctggggcattgatggcgaa
cataagggcgaatttaaccaacctaaaattgccattaacagttggcgacaggggttatcg
cgcttaatactggggtttgccagcaaagacgaaaacaccgaatttaaccagttatttgcc
gccgatcaagttgaaggcatggcagttgaaacgctggctaaattaattcgtttttttgat
gcacttgaacaaacgcaaaaagagttaaaagccagtggcaacttagctgataaagtaaag
cagttgcaacaacttacaatgcgcttttacgcaagtgatataagccaaaataacgattta
ggctttgtacaaaaagcactcgaacacgttttgcagcactttgaaaacaatgatcatact
ggcgcggtatcacaagtgctaatggtgcatattctcaagcagcaactgatgcaaaaaggg
gttggccagcgcttttttatgggccaggtaaacttttgtactttaatgcctatgcgtgca
gtgccctttaaagtggtgtgtattttaggcttgaatgatggtgattatccgcgcactgtg
cagccactgggatttgatttacttcagcacagcaaaccacaaaaaggtgaccgttcacgt
aaaatggacgaccgttacttgtttttagaagcaattttaagtgcccgtgaacatctgtat
ctaagctatatcggtaattcgtgtgtggataattcggagcgtttaccgagtgttttagtc
agtgaattaacagactatttatcccgagtgtttgagcacggtaaagatagactaattgaa
tcgttaacggttagacactacttgcagccgtttaatcctgcgtattatcaacaatcgcac
ctgcaaagctataacccgatttggttaccaaaacaaacgcctgcaacgggtcaaaacgaa
ccgttagttgcagatatcgacacgcaagttgatttagcgctgtttattcagcaattactt
gcaccacagcaatcgttttaccgctccaccattggtgcacgattaggtgactatcaattt
aataatcaagatgacgaaacctttgccttagacggtttaacgcgttatcgctatttgcaa
gaaattatcgagcgcgattatctcagtaatgcccctaatttagcggcaattattgcaagg
ggcgatttaccgcaaggtgcgggtgccgaactcgcgttcgataacatggtgaatactgta
gagcctttgttgatggagttaaagcgccatcagattattacaggtgatgaaacacccatt
gagtcaacacgtgttgatttgtcactatcaatgttgagaataagtggggcattaaaacct
gtatcgttggcgacgcaatatttgtatcgcccaacagctaaattaaaagcaaaagataaa
attgccgggtatttatatcaccttgcgggctcagccagtggtgatgtaaacagcaccgtg
tttttatctcttgatggctatattgaataccagcaactgaaccaagacgaggcattaagt
cagcttgaaaaatggggtgagctatatctctgtatgtttactcgaccgttgccactgttt
gcgacgactggatttagctatttgcaaaaacgcgattttgccgcggccgaaaacacgttt
tcaggtgcctcgtttgttggtcaaaacgaattgagcgatccgtatattgcgcttgatttt
acctccctagaaagtgtcgctgaagagtttattgaattaaccgaaacctatcttgcaccg
atagacgccattattacggagcataaatatgcaaaatcttaa
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