Pseudoalteromonas spongiae: PSPO_a1419
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Entry
PSPO_a1419 CDS
T05098
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PSPO_a1419 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a1419 (recB)
Enzymes [BR:
pspo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PSPO_a1419 (recB)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSPO_a1419 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ATC98503
LinkDB
All DBs
Position
I:1333312..1336881
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AA seq
1189 aa
AA seq
DB search
MQNLKPMAMPLCGANLIEASAGTGKTYTITALYLRLLLGFTQEGKRTTPLSIEQILVVTF
TEAATAEIKDRVRQRLITLRDTLLGKETNDQVVNELVSQIDDSHSAFYQIDSAVKSLDDA
AIFTIHGFCQRMLKQHAFESGMAFNLQFIMDQSELLETAIKDFWRQFVFPLEKQSYAAVT
SCFASPDVLLKNLFGLLSRTGVEITPHYTFEQALSLQNALYETTSTLKQQILAQEFIGFI
ENTPFKKSKPIASSKNLALLNAYCQSDEVIFEGASKRSFEIWGEQAFADKGNYLKDKTPV
SHQLATLFDEAATLKAQAEAALPVSILISAYHYLVDWLLSEKQKHQLINPDDLLQNLSLA
LETNTSGELANAILSQYPVALIDEFQDTDPIQYGIFANIYLNNNSVSHNDNALIMIGDPK
QAIYGFRGADIFTYIDAKRQVPLESHYTLDTNYRSSQQIVDGVNSIFANKDDSFIFNKDI
PFSKVKAFGKSSELGLFVNEESKSGIHFCVFDELDDTVAKGQGDNHLANICASQIAELLI
DAAAGRAKLEGDALKASDIAVLVRDRNQANSIKSALYKCGVASVFLSRDSVFETPLASHL
LTFLSALITPYNEAIFRGVLVGPLFALNYSQVHALTQNTNAWEETLEHFAELKLLLQQKG
VMAVIESLVELNALPSRWQQKGWDVPRLLTDIRHLGELLQQKQLALNSYHRLLHWLYDQI
TKFAAEGSQLRLETDQQLVNIVTMHGSKGLEYPVVYMPFVASFRENNDAVYHKDDGTLIY
DLAPDDDAKALASKESLAEDLRLLYVALTRAVHYLVVGLYNCKDGRSKTPGIAKTPLGHL
LLDKDDIDTGHDWYSQLRGFCDSHSGLSASLYSAPESPVVLPQAANTFDQLLVKQKTKSV
PNKWRLSSFSSLTKSSHGDSSSFDYKQGANDEMHLLDWQESTTAIVQNEFSFPKGANAGS
CLHAIMEEIDFNAAEQPVFEQKEPLADVVEKQLLAYQIDDGWKEVVENWIKQLLAKPLAP
LAISMEQLDMTQCLIEMEFMLPVNELVTRKLNDILLVQSRDHFTPLTSATISGMLKGFID
LIFCFDGRYFVLDYKSNYLGDSGEDYNQDNMETVMSSHHYHLQYLLYTVALHRLLKQRIA
NYDIHTHLGGSLYLFMRGMPTGNGVYYKAPDVEQVLALDSLFDKGTFNA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcttaaacctatggcgatgccgctgtgcggcgcaaacttaattgaggcaagc
gcgggtaccggtaaaacgtataccatcacagcactatatttacggttactacttggcttt
actcaagagggcaaacgtacaacgccgctcagtattgaacagattttagttgtaacgttt
accgaagcggccaccgcggaaattaaagacagggtaaggcagcgtttaattaccttgcgt
gacacactgctgggtaaagaaaccaatgatcaggtagttaacgagttagtaagccaaata
gatgatagccacagtgcgttttatcaaatcgacagtgcagttaaatcgctcgatgatgcc
gccatttttacgattcatggtttttgtcaacgtatgcttaaacaacatgcgtttgaatca
ggaatggcgtttaatttgcaatttattatggatcagagtgaattgcttgagaccgcgatt
aaagatttttggcgtcaatttgtttttccacttgaaaagcagagctacgcggcggtaacc
agctgttttgcatcaccggatgtattacttaaaaatttatttggattattgagccgtaca
ggcgttgaaattacgccgcattatacctttgagcaagcgctttcgttacaaaatgccctt
tatgagactacaagtacgcttaaacagcagatcttagcgcaagaatttatcggctttatt
gaaaacacgccgtttaaaaaatcaaagcccattgcgagcagtaaaaacttagcattatta
aacgcctattgccaaagtgatgaggtcatttttgaaggcgcatcaaaacgttcgtttgaa
atctggggtgagcaagcatttgcggataaaggcaattatttaaaagataaaacaccggtt
agccatcaacttgcaaccttatttgatgaagcggcaacgctaaaagcacaggccgaagca
gcattgccagtgtcgattttaattagtgcgtatcactaccttgttgattggttactcagt
gaaaaacaaaagcatcagctgattaatccggatgatttattacaaaatttaagtttagcg
cttgaaactaacacaagtggtgagctggcgaatgcaattttaagccagtacccggttgca
ctaatcgatgaattccaagataccgatcctattcaatacggtatatttgccaatatttat
ttaaacaataacagcgtatcacataacgacaacgcattgattatgattggcgatcctaag
caagctatttatggatttcgtggcgctgatatttttacctacattgacgccaagcgccaa
gtaccgttagaaagtcattacacactggatactaactatcgttcttcgcagcaaattgtt
gatggtgtaaacagtattttcgctaacaaagacgatagttttatttttaataaagacatt
ccatttagcaaagtaaaggcgtttggtaaaagcagcgagttgggattatttgttaatgaa
gaaagtaagtcgggtattcatttttgtgtattcgatgaactcgatgacaccgtggctaaa
ggacaaggggataatcaccttgctaacatttgcgcctcgcaaattgccgaactattaatt
gatgccgcagcgggacgtgccaaattggaaggtgacgcgttaaaggcaagcgatattgcg
gtactcgtcagggatcgcaaccaagcaaattcaattaaaagcgccctttataaatgtggc
gttgccagtgtgtttttatcgcgcgatagtgtgtttgaaacgccactcgcgagtcactta
ttgacttttctttctgcgcttattaccccctacaatgaagcgatttttcgcggcgtttta
gtgggaccgctgtttgcgctaaattattcacaagtgcatgcattaacgcaaaataccaat
gcatgggaagaaaccttagaacactttgccgagctaaaattgttattacagcaaaaaggc
gtaatggcggtgatcgaatcattagtcgaattaaatgcgcttccgagtcgttggcagcaa
aaaggctgggatgtaccacgcttgctaacggatattcggcatttaggtgaattattacag
caaaaacagctggcgctgaacagttatcatcgtttactgcattggctttatgatcaaatt
actaaattcgcggcagaaggttcgcaactgcgtctagaaaccgatcaacaactggtgaac
attgtaaccatgcacggctcaaaagggctggaataccctgttgtgtatatgccgtttgtt
gcaagctttagagaaaataacgatgcggtttatcataaagacgatggcacacttatttat
gatttagcgcctgacgatgacgcgaaagcgctggcaagtaaagaaagtcttgctgaggac
ttacgccttttatatgttgcgctaacgcgcgcggtacattatttagtggtgggcttatac
aactgtaaagatggccgcagtaaaaccccaggtattgcaaaaacgcctttagggcatttg
ttacttgataaagatgatattgatacggggcatgactggtatagccaattgcgcggattt
tgcgatagccatagtggtttaagcgcgtcactttatagtgcaccagaatcgccggtagtg
ttacctcaagcagccaacacgtttgatcaattattggttaaacaaaaaacgaaaagcgta
ccaaataaatggcgactttcgagtttttcatcattaactaagtcgtctcatggcgatagc
agctcgtttgattacaagcaaggtgctaatgatgaaatgcatttactcgattggcaagag
agcactactgcaatcgtacaaaatgagtttagctttccaaaaggcgccaatgccggtagt
tgcttacacgccattatggaagagattgattttaacgctgctgaacagccagttttcgag
caaaaagaaccgcttgcagatgttgtggaaaagcagttactcgcatatcaaatagatgat
ggttggaaggaggttgttgaaaactggattaaacagttattagctaagccactagcgcca
cttgccatatcaatggaacagttagatatgacgcagtgcctaatcgaaatggagtttatg
ctgccagtaaacgaattagtgacccgcaaacttaacgatattttgttagtacagagtcgc
gaccattttacaccgcttacaagcgctaccataagcggcatgctgaaaggttttatcgat
ttaatcttttgttttgatggccgttactttgtgctcgattataagtcgaattatttaggc
gatagcggcgaagattataatcaagacaatatggaaactgtgatgagttcacatcactac
catttgcaatacttactctacacggtagcgttacaccgtttgttaaaacaacgcattgct
aattacgacattcacacccatttagggggcagcctttacttatttatgcgcggtatgcca
acgggtaatggcgtgtattacaaagcacccgatgttgagcaagtgcttgcattagatagc
ttatttgataaggggacattcaatgcgtga
DBGET
integrated database retrieval system
