Pseudoalteromonas spongiae: PSPO_a1810
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Entry
PSPO_a1810 CDS
T05098
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPO_a1810 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspo03019
]
PSPO_a1810 (rne)
03009 Ribosome biogenesis [BR:
pspo03009
]
PSPO_a1810 (rne)
Enzymes [BR:
pspo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSPO_a1810 (rne)
Messenger RNA biogenesis [BR:
pspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSPO_a1810 (rne)
Ribosome biogenesis [BR:
pspo03009
]
Prokaryotic type
rRNA processing factors
PSPO_a1810 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATC98850
LinkDB
All DBs
Position
I:1704298..1707282
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AA seq
994 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARSYFPEGYTFNGRPNIKDVVKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSRLELPKGMGLIVRTAGVGKSFEEL
EYDLRALLVHWDAIKKASESGPAPFLIHQESNVIFRAIRDYLRRDIGEILIDKQRVFDEA
KAHIERFRPDFINRVKLYTGDAPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPPRHQRAVEN
KLKEAVKPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGTCPRCNGQGTVRSNESLAL
SILRLLEEEAIKDNTSQVNAQVPVPVATYLLNEKRKSVRRIEKRHGCHVVIIPNPHLETP
HYEVLRLKKDETIETVSFDQVQAPEVKTDAIVHAEKAVKEQPVLQGVVVPSEPAPVKKEV
KEGLFTKIAKWFGSLFASEEPEKPVQKRGGRRNNQRGNDNRRRNQRKPNNRNKQAAGEQK
EQREQRDEKRNSKENNNRRRRNNRSNANKVEKEQKPVEVEANQQQPVKVKERRQRRNMRK
KVRIEKTNEALETNTETQAPVVENTAPVEKQKPQRSKPVKAKKPAKVTEEVENADLVAAS
ESNADAPVAEQKTQEVAEQQVVANDVANEPVEQVSEPKAATESAESQNDDEKETRTRSRR
SPRHLRAAGQRRKKPSETKSDIELETTESPGFVPVADQAMAEVEVDSVATPEVQETKTEA
VEAPIVKTKVAENAAAEVVVEPTKVEEAPKVEKTQPEVKAEVVEDANGENLDAAVPAAED
VVETQQAETTTVETPSVAAVAAQTETNTAPATNGVAYRHASAPMTKASGGAMTEGFEMPS
AMPHSERQVPSASSMQPGSINPVGKASAPMAKTV
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctgatcaatgcaacgcaacaagaagaaatgcgcgttgcactggttgat
ggacagcgcttatatgatctagatatcgaaagccctggccatgaacaaaaaaaagcaaat
atctataagggtaaaattacccgcgtagaaccatctctagaagctgcttttgtcgactac
ggcgctgagcgtcacggtttcctccctcttaaagaaattgcccgcagttacttcccagaa
ggttacactttcaacggtcgcccaaacatcaaagatgttgtaaaagaaggccaagaagta
attgtacaagttgataaagaagagcgcggccaaaaaggtgcagcactgactacctttatt
agcgttgcaggtagctacctagtattaatgccaaacaacccacgtgctggcggtatttct
cgtcgtatcgaaggtgatgagcgtacagagctaaaagaagcactgtctcgtttagaatta
ccaaaaggcatgggcttaattgtacgtactgccggcgttggtaaatctttcgaagaactt
gaatacgatttacgtgccctgcttgttcattgggatgctatcaaaaaagcgtcagaaagc
ggcccggcaccatttttaatccaccaagaaagcaatgtaattttccgcgctattcgtgat
tatttgcgtcgtgatattggcgagattttaattgataagcagcgcgtattcgatgaagca
aaagcacatatcgaacgttttcgcccagacttcattaaccgtgtaaaactttacacaggt
gatgcgccactgtttacccattatcagattgaaagccaaattgaatctgcattccaacgt
gaagtacgtttaccgtcaggtggctcaatcgttattgacccaactgaagcgttaacatca
attgatatcaactcgtctaaagcaacaaaaggcggcgatattgaagaaacggcactaaac
actaacttagaagcagcagatgaaattgcgcgccaacttcgcttacgtgatttaggtggc
ctagttgttatcgactttattgatatgacaccgccgcgccaccaacgcgctgttgaaaac
aaattaaaagaagcagttaaaccagaccgcgcacgtgtacaaattggcaaaatttcacgt
ttcggtttacttgaaatgtcgcgtcagcgtcttcgtccatcactgggtgaagcaagccaa
ggcacctgccctcgttgtaacggccaaggtactgtacgctcaaacgagtcacttgcatta
tcgattcttcgtctactagaagaagaagcgattaaagacaatacgtcacaagtaaatgca
caagtacctgtaccagtagcaacttacttactaaacgaaaaacgcaagagcgtgcgccgt
attgaaaaacgccacggctgtcatgtagtgattattccaaatccacatttggaaacacca
cactacgaagtattgcgtttaaagaaagatgaaacgattgaaacggtaagctttgaccaa
gttcaagcacctgaagtaaaaacggatgccattgttcacgctgaaaaagcggttaaagag
caaccagtactccaaggtgttgttgtaccaagcgaacctgcgccagttaaaaaagaagta
aaagaaggcttattcactaagatcgctaagtggtttggtagcctgtttgcttctgaagaa
ccagaaaagccggtacaaaaacgcggtggtcgtcgtaataaccaacgtggtaacgacaat
cgacgtcgcaatcagcgcaaaccgaacaaccgtaataagcaagctgctggtgagcaaaaa
gagcaacgcgaacagcgcgatgaaaaacgtaactcaaaagagaacaacaatcgtcgccgc
cgtaacaaccgctcaaacgctaacaaggttgagaaagaacaaaagcctgttgaggtggaa
gcaaatcaacaacagccggttaaagtaaaagagcgtcgtcaacgtcgcaatatgcgtaaa
aaagtgcgtattgagaaaaccaatgaagcgttagagacaaatacagaaacgcaagcgcct
gtagttgaaaatacagctccggttgaaaagcaaaagccacagcgttctaagcctgtaaaa
gcgaaaaagccagcaaaagtgactgaagaagtagaaaacgctgatcttgtagcggcttca
gaatcaaacgctgacgcgccggttgcagagcaaaaaacacaagaagttgccgagcaacag
gttgttgctaacgacgtagccaatgaacctgtagaacaagttagtgagccaaaagccgcg
actgaaagcgctgaatcacaaaacgacgacgaaaaagagacacgtactcgctctcgccgt
tcgccgcgccatttacgtgcagccggtcagcgtcgtaaaaagccaagcgaaactaagtct
gatattgaacttgagacaacggagtcaccaggctttgtaccagttgctgatcaagcaatg
gcagaagtggaagttgactcagtcgcaactcctgaagtgcaagagactaaaaccgaagct
gttgaagcaccgattgttaaaacaaaggtcgcagaaaatgctgcagctgaggttgtcgtt
gaaccaactaaagttgaagaagcaccaaaagttgaaaaaacgcagcctgaagttaaagct
gaagtagttgaagacgctaacggtgaaaaccttgacgctgccgttccagctgctgaagac
gttgttgaaacgcaacaagcagaaacgacaacagttgaaacaccaagtgttgcagcggtt
gctgctcaaactgaaacaaacacagcacctgcgacaaacggcgtagcttatcgccatgca
agtgcgccaatgacaaaagcgtctggtggcgcaatgactgaaggttttgaaatgccatca
gcaatgccacacagtgaacgccaagtaccaagtgcaagcagtatgcaaccgggtagcatt
aacccagttggtaaagcaagcgcaccaatggcaaaaacagtttaa
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