Pseudoalteromonas spongiae: PSPO_a1953
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Entry
PSPO_a1953 CDS
T05098
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSPO_a1953 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a1953 (uvrB)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSPO_a1953 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSPO_a1953 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
Kinesin
UB2H
SLFN-g3_helicase
AAA
AAA_5
DUF87
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ATC98972
LinkDB
All DBs
Position
I:complement(1844217..1846232)
Genome browser
AA seq
671 aa
AA seq
DB search
MSKENVSDFKLVSPFKPNGDQPTAIAQLVDGLEAGLAHQTLLGATGTGKTFTMANVIAEL
NRPTIILAHNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVVASDTFIEKDASIN
DHIEQMRLSATKALLERQDVIIVASVSAIYGLGDPDSYLKMMLLIKQGDTIDQRDLLRRL
AELQYTRNDIDFQRGTYRVRGEVIDIFPAESETMAIRVEMFDDEVDRLSIFDPLTGAVER
HIIRATIYPKTHYVTPREKILAAIDNIKEELKIRRKQLLDNNRLVEEQRVAQRTQYDIEM
MSELGYCSGIENYSRYLSGRAPGEPPPTLLDYLPDEALMIIDESHVTVSQVGAMYRGDRS
RKENLVEYGFRLPSALDNRPLKFEEFEAISPQTIYVSATPGDYELERSNNEVAEQVIRPT
GLLDPELEIRPVGTQVDDLLSEIYKRVELNERVLVTTLTKRMAEDLSDYLNDHDVKVRYL
HSDIDTVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLI
QTIGRAARHINGRAILYADRITDSMKRAIDETERRRSIQHQYNLDNGITPQALNKKITDI
MDVGEQVDDAPKASKRTVSKATAEILSADEINKKIKQLESEMLAFARDLEFEKAASVRDQ
IQQLHQELINA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagaaaatgtttcagatttcaaattggtatcgccctttaaacccaatggcgat
caacccactgccatcgcgcaactagttgatggactcgaagcaggattggcccaccaaacc
ttactgggtgctaccggtacaggtaaaacctttaccatggcgaatgttattgcagagcta
aatcgcccgaccattattttggcgcataacaaaaccctagcagctcagctatacggtgag
atgaaagagttctttcctgaaaatgccgtggagtactttgtttcttactacgactattac
cagccagaagcgtatgtagttgcaagtgatacctttattgagaaagatgcttcaataaac
gaccacatcgaacaaatgcgtttatctgcaaccaaagcgttgcttgagcgacaagacgtt
attattgttgcttcagtttcggcaatttacggtttgggcgatcctgactcttatttaaag
atgatgttactgataaagcaaggtgacaccatagatcagcgtgacttactgcgccgactt
gctgaactgcaatacacccgcaatgacattgattttcaacgtggtacctatcgtgtgcgc
ggcgaagtaatagatatttttcctgctgaatctgaaaccatggctattcgcgttgaaatg
tttgacgatgaagtggaccgcttaagcatttttgatccacttacaggcgcggtggaacgg
catattattcgcgccacaatttacccgaaaacccactatgtaacgccgcgtgaaaagatt
ttagcggcaatagacaacattaaagaagagttgaaaattcgtcgtaaacagttacttgat
aataaccgtttagttgaagagcagcgcgttgcacagcgtacccaatatgatattgaaatg
atgagcgagctgggatattgctcgggcattgaaaactactcgcgttatttatcgggccgg
gcacctggcgagccaccaccgacattgcttgattacttgcctgatgaagcgttaatgatt
attgatgaatcacacgtaactgtatcgcaagtaggcgcaatgtatcgtggcgatcgcagt
cgtaaagaaaaccttgtggaatatggctttcgtttaccatcggcacttgataatcgtccg
ttaaagtttgaagaattcgaagcgatttcgccgcaaacgatttatgtgtcggcaacgcct
ggcgattatgaattagaacgctccaataacgaagtagccgagcaagttattcgtccaaca
ggcctattagatccggaacttgaaattcgcccagtcggaacgcaagtggatgatttatta
tctgaaatttataagcgtgttgagctaaacgagcgtgtattagttaccacattaaccaaa
cgcatggctgaggatttatccgattatttaaatgatcacgatgtaaaagtgcgttacctt
cactctgatatagataccgttgaacgtgttgaaattattcgtgacttacgtgcgggtgta
tttgatgtgctggtcggaattaacttgcttcgtgaagggttagatatgccagaagtgtct
ttggtggcgattttagatgctgacaaggaaggtttcttgcgttcaacccggtcgcttatt
cagaccattggtcgtgctgcccgtcatattaacggccgcgcaattctatatgcggatcgc
ataacagattcgatgaagcgggcaattgacgaaaccgaacgtagacgcagtattcagcac
caatacaacttagataacggcattacgccacaagccctgaataagaaaatcaccgacatt
atggacgtgggtgaacaagttgatgatgcgccgaaagcaagtaagagaacggtcagtaaa
gcgaccgctgaaattttatcagccgatgaaattaacaagaaaatcaaacagcttgaatct
gaaatgttggcgtttgcccgagaccttgaatttgaaaaggcagcaagcgtacgcgatcaa
attcaacaattacatcaagaattaataaatgcctaa
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