Pseudoalteromonas spongiae: PSPO_a2780
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Entry
PSPO_a2780 CDS
T05098
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPO_a2780 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspo03019
]
PSPO_a2780 (recQ)
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a2780 (recQ)
Enzymes [BR:
pspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSPO_a2780 (recQ)
Messenger RNA biogenesis [BR:
pspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPO_a2780 (recQ)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSPO_a2780 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ATC99678
LinkDB
All DBs
Position
I:2677106..2678929
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AA seq
607 aa
AA seq
DB search
MENQQATQPVMQQQTPHSVLSSVFGYKQFRAGQEQVIDAVLAGQDCLVLMPTGGGKSLCY
QVPALLLPGITIVVSPLISLMQDQVAQLKAQGVAAAYINNSQSREEQQLIYQGLHQGQIK
ILYVAPERLLTDDFSTRLQHLNIGLFAIDEAHCVSHWGHDFRPHYYRLGQLKQRFSHIPI
MALTATADIATRNDIVMQLGLTNAHIYTGSFDRPNIRYTIEEKFKPLSQLMRFLKEQKGQ
SGIIYCSSRKRVDDIAEKLVDAGYNAASYHAGLENEQRSFVQNAFARDDIHIVVATVAFG
MGINKPNVRFVIHYDIPKNIESYYQETGRAGRDGLSAEAIMYFDPADVPRVKRFFDDIPD
EQRRKVEEQRFNAMASFAEAQTCRRQILLNYFSEYQGKPCGNCDICLNPPKQFDGTELAQ
KALSCVYRVEQKFGMGYVIEVLRGANTIRIRENQHDQLSTFGLGKDKSVEYWLSILRQLI
HHGLLHQDITQSSSLRLTEAARPVLKGDFALQLAEPRLEVKHVYKDKLARFNYDKKLFAK
LRGLRKELADAEDVPPYVVFSDATLAEMAQKMPTSDAEFLKVSGVGFTKLNKYGAYFMNA
IRMHLTS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcaacaagcgacccaaccagtaatgcagcaacaaacgcctcacagcgtatta
agttcagtatttggctataagcaatttcgtgctgggcaagagcaagtcattgacgcagtg
cttgcaggtcaagattgtttggttttgatgccaaccggtggtggtaaatcattatgttat
caagtacctgcattactgttacccggtattaccattgtggtctcgccgcttatttccctc
atgcaagatcaagtcgcacagctaaaagcacaaggtgttgcagcggcatacattaacaac
agccaatcgcgcgaagagcagcaattaatttatcaaggcctgcaccaaggccaaattaaa
attttatatgtagcacctgagcgactgcttactgacgattttagtacccgcttacagcat
ttaaatattggtttatttgccatagatgaagcgcactgcgtttctcactggggccatgat
tttagacctcactactatcgcttagggcaacttaaacaacgctttagccatattcctatt
atggcactcactgcaacggcagatattgccacgcgtaacgatatcgtgatgcaactgggt
cttactaatgcccatatttatacgggcagttttgaccgccccaatatccgttacaccatt
gaagaaaaattcaaaccgcttagtcagttgatgcgctttttaaaagagcaaaaagggcaa
agcggtattatttattgctcaagccgaaagcgcgttgacgacatagctgaaaagctcgtt
gatgcaggctataacgctgcgtcttatcatgctgggcttgaaaatgaacagcgctcattt
gtgcaaaacgcctttgcgcgggacgatattcatatagtcgtggcgactgttgcctttggc
atgggaattaataaaccgaatgtgcgttttgttattcattacgatattcctaaaaacatc
gagtcgtactatcaagaaaccggtcgcgcaggccgtgatggcctctcagccgaagccatt
atgtattttgaccctgccgatgtaccacgcgtaaaacgcttttttgatgatattcccgat
gagcaacgtcgtaaggtagaagagcagcgctttaatgccatggccagctttgctgaagca
caaacctgtcgccgccaaatactgcttaattatttttctgagtatcaaggtaagccttgc
ggaaactgtgatatttgtttaaatccgccaaaacaatttgatggaactgaactggctcaa
aaagcattaagttgtgtttatcgcgtcgagcaaaagtttggtatgggttatgtgattgaa
gtattacgcggcgccaataccattcgtattcgcgaaaaccaacacgaccaactttcaacg
tttggccttggcaaagacaaatcggttgaatattggctgagtattttgcgtcagcttatt
caccacggattattgcaccaagatatcacgcaatcatctagcttacgcttaaccgaagca
gctcgcccagtattaaaaggtgattttgccctgcaactagccgaaccgcgacttgaagtg
aaacacgtttacaaagacaaacttgcacgctttaactacgataaaaagctattcgccaaa
cttcgcggcttacgtaaagagctggctgacgcggaagatgtaccaccttatgtggtattc
agtgatgctacgcttgctgaaatggcgcaaaagatgccaaccagcgatgccgaattcctg
aaagtatcaggtgttggatttaccaaactcaataaatatggcgcctactttatgaatgcc
attcgtatgcatttaaccagctaa
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