Pseudoalteromonas spongiae: PSPO_b0895
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Entry
PSPO_b0895 CDS
T05098
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPO_b0895 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspo03019
]
PSPO_b0895 (deaD)
03009 Ribosome biogenesis [BR:
pspo03009
]
PSPO_b0895 (deaD)
Enzymes [BR:
pspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSPO_b0895 (deaD)
Messenger RNA biogenesis [BR:
pspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPO_b0895 (deaD)
Ribosome biogenesis [BR:
pspo03009
]
Prokaryotic type
rRNA helicases
PSPO_b0895 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ATD00843
LinkDB
All DBs
Position
II:824642..826444
Genome browser
AA seq
600 aa
AA seq
DB search
MSNDKILFEELNLPTPILSAITELGFVEPTPIQQQSIPALLAGKDVLGEAQTGTGKTAAF
GLPLLARLDANLNAPQMLVVCPTRELAIQVAEAITDFAKNIRGLNIATVYGGQSYTIQNR
DLKRGPQIVVGTPGRMMDHIEKGRLNLDNLKACVLDEADEMLNMGFLDDIEWILDHVPED
TQMAFFSATMPAPIKKITSQFLTDPVHVKIAVEKQAKANITQRAWRVGAIGKTAGLERIA
EVVDYDAMIVFVRTRNDTLTLAEHLVNKGFKAAALNGDMQQQDRERIVDQLKNGRIHILI
ATDVVARGLDVPRISHVINYDLPFDSESYVHRIGRTGRAGREGEAILFASHREMRLLNRL
ERATEGQITPFEMPDASQLSKHRIEKTKEKLLSVAASPNLEKYTEVLARFTEESEITTEQ
LAAAMLYQLQQKLPLFPQADPVDKRGARDGRREGGRERGGRDGRREGGRERRNPGDFATY
KFAVGRAQGVKPSDIVGAIANEVRINSREIGNIKLFDNHCHVELPKTLPSQGFEKLKNVT
IRRHKINPSIVEGATGQYDSENRGKRPPRKRERSNDDRSIKTFKKKSRPRRDERSMPTFN
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgacaaaattttattcgaagaactaaaccttcctacccctattctaagtgca
attacagaactcggttttgtagagccaactccaatccaacaacagtcaattccagcatta
ttagcaggtaaagatgtactaggtgaagcgcaaacaggtactggtaaaactgcagcattt
ggtttaccactactagcacgcctagatgcaaacctaaacgcaccacaaatgttagtggta
tgtcctacacgtgagcttgctattcaggtagcagaagcaattacagatttcgctaaaaac
attcgcggtttaaatattgcgactgtttacggtggtcaatcttatactatccaaaaccgc
gacctaaaacgtggcccacaaattgttgttggtacaccaggtcgtatgatggatcacatt
gaaaaaggtcgtttaaacctagacaacctaaaagcatgtgtattagatgaagcagacgaa
atgcttaacatgggcttcctagacgatattgaatggatcttagaccatgtgccagaagat
acgcagatggcgttcttctctgcaactatgccagcacctatcaagaaaattacgtctcag
ttcttaactgatcctgttcacgttaaaattgctgttgaaaaacaagcaaaagctaacatc
acacaacgtgcatggcgtgtaggtgctattggtaaaacagcgggtctagagcgtattgca
gaagttgttgattacgatgcaatgattgttttcgtacgtactcgtaacgacaccctaacg
ctagcagagcaccttgttaacaaaggctttaaggcagcagcactaaatggtgatatgcag
cagcaagaccgtgaacgcatcgttgaccaacttaaaaatggtcgtattcacattcttatt
gcaaccgatgttgtagcgcgtggtcttgacgtaccacgtatcagccacgtaattaactac
gacttaccatttgatagtgaatcatatgttcatcgtatcggtcgtactggtcgtgctggt
cgtgaaggtgaagctattttatttgcatcacaccgtgaaatgcgccttcttaaccgttta
gagcgtgcaactgaaggtcaaattacgccatttgaaatgcctgatgcaagccaattaagc
aagcaccgcattgaaaaaacaaaagaaaagctactaagcgttgcagcaagcccgaacctt
gaaaaatacactgaggtacttgcaaggttcactgaagaaagtgaaattacaacggaacaa
ttagcagctgcaatgttgtatcaactacagcaaaaactaccactattcccacaagcggat
ccggtagataagcgtggcgcacgtgatggtcgtcgtgaaggtggccgtgagcgcggtggc
agagatggtcgtcgtgaaggcggtcgtgaacgtcgtaatccaggtgattttgctacctat
aaatttgcagttggtcgtgcacaaggtgttaaaccaagtgacatcgttggcgcaattgct
aatgaagtacgtattaattctcgtgaaatcggtaatatcaaactgtttgataaccactgt
cacgttgaattaccaaaaacgttgcctagccaaggttttgaaaaattaaagaacgtgaca
attcgccgccataaaatcaacccaagcattgttgaaggtgcaacgggtcaatatgattct
gaaaatcgtggtaagcgtccacctcgtaaacgtgagcgtagcaacgacgatcgctctatt
aaaacatttaaaaagaaaagcagaccaagaagagatgagcgttcgatgccaacgtttaac
taa
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