Pseudoalteromonas spongiae: PSPO_b1082
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Entry
PSPO_b1082 CDS
T05098
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSPO_b1082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspo03019
]
PSPO_b1082
Enzymes [BR:
pspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSPO_b1082
Messenger RNA biogenesis [BR:
pspo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSPO_b1082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
UvrD_C
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ATD00997
LinkDB
All DBs
Position
II:complement(992724..993962)
Genome browser
AA seq
412 aa
AA seq
DB search
MSFSAFNLNSHLSETLTRLDYHTATPIQSLAIPEIMAGHDIIAHAQTGTGKTAAFMLPII
DKLLSRQPISNTVSALILVPTRELAQQVAKASTQYSENCGLNVACLYGGANIGPQEKQLK
QGAQIVVATPGRLLDHLIKGTLSLSDLAYLVFDEADRMLDMGFMGEIKRIMRHVPLTRQT
LLFSATVDEQVLNNVSQWLNEPKRVGVDAPNTAATKVEQLFYAVDEERKRELIAYTIGKN
NWHQVLVFTRTKNYADELAKELNKDGLPTTAIHGDKSQGARNKALEQFRAGELRVLVATD
VAARGIDIPSLDYVINAELPYIAEDYVHRIGRTGRAGKAGTAISLVSLDENWLLEEIEVL
LDERLTPQWLTGFEPDLTREPKDDRKNTTKSRKQRDKKRILGQRSNRRRKKN
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcagcatttaacctaaattctcacttgtccgagaccttaacgcgattggat
taccatacggccacgcctattcaatcattggctattccagagattatggccggccacgat
atcattgcgcacgcgcaaacaggaaccggtaaaacggcagcgtttatgttacccattatc
gataagctgttatcacgtcagccgatatcgaatacggtaagtgccttaatcttagtgcca
acacgagagcttgcgcaacaagttgcaaaggcgagtactcagtacagtgaaaactgcgga
ttgaacgttgcgtgtttgtacggtggcgcaaatattggaccacaagaaaaacaacttaaa
caaggcgcgcaaattgttgtagcaacgcccggccgtttactcgatcatttgattaaaggc
acactttcgttgtcagatttagcgtatttagtgttcgatgaagcagatcgtatgctggat
atggggtttatgggtgaaattaagcgcataatgcgtcatgtgccactaacacgacaaacc
ttgctattctcggcaacggttgatgagcaagtactcaataatgtatcgcaatggctaaat
gagccaaaacgtgtaggggtagatgctcctaacaccgcagcgaccaaagttgagcaatta
ttttatgcggtagacgaagaacgaaagcgcgagttaatcgcttacaccataggaaaaaac
aactggcatcaagtgttggtgtttacgcgtaccaaaaattatgccgatgaacttgcgaaa
gaactcaataaagacggtttaccaaccacggctattcatggcgacaaatctcaaggcgca
cgaaataaagcgctagagcagtttcgagccggcgagttacgtgttttagtggcaaccgac
gttgcggcgcgtggcatcgatattccgagtttggattatgtgattaatgctgagttgccg
tatatcgctgaggattacgtacaccgcattgggagaactgggcgtgcaggtaaagcagga
actgcaatttcactggtgagcctagacgaaaattggttgttggaagaaattgaagtatta
ctggatgaacgtttaaccccacaatggttaacgggatttgagccggatttaacccgagag
ccaaaagacgatagaaaaaacacaacaaaatctcgcaaacagcgagataaaaagcgtatt
ttaggtcaacgcagtaatcgtcgccgtaaaaaaaattaa
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