Pseudoalteromonas sp. PS1M3: PS1M3_10100
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Entry
PS1M3_10100 CDS
T11044
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psps Pseudoalteromonas sp. PS1M3
Pathway
psps03030
DNA replication
psps03430
Mismatch repair
psps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PS1M3_10100 (dnaE)
03430 Mismatch repair
PS1M3_10100 (dnaE)
03440 Homologous recombination
PS1M3_10100 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psps03032
]
PS1M3_10100 (dnaE)
03400 DNA repair and recombination proteins [BR:
psps03400
]
PS1M3_10100 (dnaE)
Enzymes [BR:
psps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PS1M3_10100 (dnaE)
DNA replication proteins [BR:
psps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PS1M3_10100 (dnaE)
DNA repair and recombination proteins [BR:
psps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PS1M3_10100 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BBW90923
LinkDB
All DBs
Position
1:1117022..1120513
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAPDFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPAIAITDQMNFCGLVRFYGATHNA
GIKPIVGADFWLRSPEFPDEPCRITILAKDNVGYKNITLLISEAYQRGHVFHRPVIDREW
LANHKEGLIILSGAKDGDLGKALLKNNPGVIESVISFYKQHFSDHYYLELVRTNRPLEED
YLHMAVALAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRPKRFSEEQYL
KTPEQMAELFSDIPEALQNTVEIAKRCNVTVKLGEYFLPDYPTGSLNIDEFLVKVSEDGL
EERLQFLFPDEEDRKVKRIEYDERLAVELGVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSA
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPGDPGMTLAKAFEVEPR
LQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMQREGKAPVDINTIPLDDKKSIELL
LRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKLGREE
ISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHHPA
EFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTVNLQGEIVYGIGAIKG
VGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYAGALDKLGPEKTQAGR
ATLLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQAFIKATGLTDNEWLEGEKD
TLGLYLTGHPINQYRKELRYYTSGKLVDLQPTNRDVLSTAAGLVISARTLINKKGNRWGL
ITLDDKSARIDVRLFPEQFEMYQEMLQVNNILVISGQVSFDNFSGGITMTAREINTIAQA
REKRIKAIKMTLNMVQIEAGFFDKLQKVLEPYKMGTCPIKVYYQRPDALAQLTLGIEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacctgattttgtacatttaagggtccactcagacttttcgatggttgatggc
ttagctaaaaccaagccaatagtcgctaaggcgcaagagctagaaatgcccgcgattgct
attaccgatcaaatgaacttttgtggattagtacgcttttatggcgctacccataatgcg
ggtataaagccgattgtgggtgctgacttttggctgcgcagccctgaatttccggatgag
ccatgtcgcattacaattttagctaaagataatgtaggttataaaaatataacgctatta
atttctgaggcgtatcagcgtggtcatgtatttcatcgtccagtaattgatagagaatgg
ttagctaatcataaagaaggattaattattctctcgggcgcaaaagacggtgatttaggt
aaagcattattaaaaaataatccgggcgttatagaaagcgtaattagcttttacaagcag
cactttagcgatcattactatttagagcttgtacgaactaaccgcccgctcgaagaagat
tatctgcacatggcagtagcgcttgcagctaaagagcagctgcccgttgttgcaaccaac
gaagtggtatttctaaaacctgaaaattttgaagcgcacgaaattcgagtagctatattt
gatggctacacacttgatgacaaacgccgtccaaaacgtttctcagaagaacaataccta
aaaacgcctgagcaaatggctgagctatttagcgatatacctgaagcactgcaaaatacg
gtagaaatagctaagcgctgtaatgtgactgtaaagttaggcgaatactttttaccagat
tatccaacaggctctcttaatattgatgagtttttggttaaagtgtcagaagatggcctt
gaagaacgactccagtttttgttccctgacgaagaagatagaaaagtaaaacgtattgaa
tacgatgaacgtttagccgtagagcttggcgtaatcaaccaaatgggttttccgggttac
ttcttaatcgtaatggagtttattcagtggagtaaagataacaatataccggtaggtcca
gggcgaggatcgggtgcgggttcattagtggcgtacgcacttaaaattactgacctcgat
ccgctggaatttgacttgctttttgagcgattcctaaaccctgaacgtgtatcaatgccc
gatttcgacgtcgatttttgtatggacagacgcgacgaagtaattgatcacgtatcggca
ttgtatgggcgtgatgcggtatcacaaattattacctttggtactatggccgcaaaagcg
gtaatacgcgatgtaggtcgtgtacttggtcatccttatggttttgttgatcgtatttcg
aaactgatcccaggcgatccgggaatgacccttgccaaagcctttgaagtagagccgcgt
ttgcaagaagcatacgatggtgactcagaggtaaaagatttaatcgatatgtgtcgcatc
ctcgaagggtgtacgcgtaatgccggtaaacatgccggtggtgttgtaatatcgccgacc
accattaccgactttgctgcactttattgtgacgatgaaggtaaatttccggtaacacag
tttgataaaaacgacgtagaaaccgcgggccttgttaagttcgatttcttgggtttacgt
accttgaccattttgcagtgggcagtggatatgaccaacgtgcgtatgcagcgcgaaggc
aaagcccctgttgatataaacactattccactggatgataaaaaaagcatagagctatta
ctgcgcgccgaaacaaccgcggtgtttcagctagaatcgcgcggcatgaaagatttagta
cgccgccttaagcccgattgctttgaagatatgattgcattagtagccttgttccgccca
ggtccattgcaatcaggcatggtagataactttatcgaccgaaaactgggtagagaggaa
atttcatacccagatgcgcagtaccaacacgaaagcttaaaaccaatactcgatcccact
tatggcattattttgtatcaagaacaagtaatgcaaatagcgcaggtactcgcaggctat
acgctgggtggtgcagatatgttacgccgtgcaatgggtaagaaaaaacctgaagaaatg
gcaaagcagcgttcaacgtttgaagatggcgcgcgtaataatggtattgatggcgaactg
gcgataaaaatcttcgacttggtagaaaaattcgcaggttatggttttaataaatctcac
tcagcagcgtatgcactggtttcgtaccaaacgctgtggatgaaaacgcaccacccagct
gagtttatggctgcggtaatgtcggccgatatggataacaccgacaaaatagtgattttg
gtagatgaatgtgaaaacatgaaacttaccttattaccgcccgatgtaaacgccggtgag
tttaagtttacggtaaacctgcaaggcgaaattgtttacggtattggcgcaattaagggt
gtaggtgaagcgccagtagacgctatattagaagcgcgcgcaaagggcggcccgtttaag
gatttatttgatttttgtgctcgcgttgacttaaaacgtctaaataaacgtgtcaccgaa
aaattaatttatgccggtgcacttgataagcttgggccagagaaaacccaagctgggcgt
gcaacattactggcaagtttaaaagacgctatgcgcgcggccgatcagcacaacaaggca
gagcaacttggacaaagcgatttatttggtttattggctactgagccagacgaagtagag
caagcctttattaaggccacgggcctgaccgacaatgaatggcttgaaggtgaaaaagat
accctaggcctttatttaactgggcatccgataaatcagtatcgcaaggagcttaggtat
tacaccagcggaaagctggtggatttacaaccaactaatcgtgatgtactctctacagcc
gctggtctagttatttcagcgcggaccttaatcaataaaaaaggcaaccgttggggctta
ataactttagatgacaagagcgcccgtattgatgtacgcttgtttccagaacagtttgaa
atgtaccaagaaatgcttcaagttaacaatatcttggtaatatctggacaggtcagcttt
gataacttctccggtggcattacaatgaccgccagagaaataaacaccattgctcaagcg
cgtgaaaaacgtattaaagcgattaaaatgacgctgaacatggtgcaaatcgaggcaggt
ttcttcgataaattacaaaaagtactcgaaccttataaaatgggaacgtgtccgatcaag
gtttattaccaacgcccagatgcgttggcgcaattaaccctagggatcgaatggtgtgtc
acgccgagcgacgacttgattcacaagttatcactcatggcggcacaagatgtagaacta
gaatttaactga
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