Pseudoalteromonas sp. PS1M3: PS1M3_11910
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Entry
PS1M3_11910 CDS
T11044
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psps Pseudoalteromonas sp. PS1M3
Pathway
psps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PS1M3_11910 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psps03400
]
PS1M3_11910 (recB)
Enzymes [BR:
psps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PS1M3_11910 (recB)
DNA repair and recombination proteins [BR:
psps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PS1M3_11910 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BBW91104
LinkDB
All DBs
Position
1:1337765..1341331
Genome browser
AA seq
1188 aa
AA seq
DB search
MQALNPLTMPLKGQSLIEASAGTGKTYTITGLYLRYLLGMQIPGELNAPLSVEQILVVTF
TDAATQEIKDRVRNRIIAARDALLGQNPNDELIEGVIAAVDDKHSAFDLLDAAAKSMDEA
AIFTIHGFCQRMLKQHAFESGVAFNLEFILDERDILLETIKDFWRSFVYPLSEDRTDAIL
DVFSAPESLFSQVASILNKANAHITPQINLDDVWQARDEYLALIPQFKKDCQEHAFTDAI
KGSGLSGAKTPARKANLAALDAFCASGDMFFEFGTNKYSFEIWSTENLSDTTNYKKNQPL
FTHPLLSQFDTLSALNNTMNQGLKIALVQEAARWVKSAIVKRKQEQSVITPDDLLTNLYT
ALNNEQGDVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSQIYGQANTTLAMIGDPKQAIYG
FRGADIFTYIGAKKAVDEPQQFTLGTNFRSSSDIVNSVNSLFSKHDNSFIYNDVIPFNKV
SAKGKKADESFLIDGKPANAFEFNVFVDEAADEKNKPTSKGLGQAHLATYFANKIVTLLE
HAKQGTACIGKTPISAADICILVRDRVEAQIMKKALSEAKIASVYLSRDSVFSQELSHHL
LNFLTALHGQYDESLLRGVLAGPLFCLSYNDVYALADNENAWQEHLNFFAQLSHIWHKQG
AMAMLERLLSHNQLSAKWQGLGYNVERWLTDFRHLGEILQQKQIELEGTLRLLRWFAQKV
SQQDGETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYRETKEALYHKNGKLIYD
LSKDEDALQQAEKERLAEDLRLLYVALTRAVHFCALGVYNIGQGQSSRLAIQSSALGHVL
FSELEISSSQIWRTHLSEFCDKHTFMCYQQFTSEELRQQGTLQFVNTEAAQQILSVNNSK
AHIERDWRATSFSALSFKKHSDELAPGRSDEDHEKDEFAVQQDELPSPFSFPKGAKPGSC
LHEIFEQIDFTSPVVHPTNSEQNLSQVIKRAFEKYHISDTWQPIAQQWVLDVLNCPLNAQ
TDLSLSKLAPSDCLVEMEFNLPLTSLSAPKLNEVLIKHFGFVQSKLDFSHVKGLLKGFVD
LIFCYQGKYYILDYKSNYLGNTPKDYEPEQLEQAMSSHQYHLQYLIYTVALHRLLKQRIS
DYSIERHLGGVYYTFLRGMPAGQGVFFNQLTLEQVTILDGLFSQGVML
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgcttaatccacttactatgccactcaaagggcaaagtttaatagaagccagt
gccggaacgggtaaaacgtataccattaccgggttatatttacgctatttacttggcatg
caaataccgggtgagcttaatgctcctttaagcgtagaacagattttggtagtaacgttt
accgacgctgctactcaagaaatcaaagatcgtgtgcgtaaccgtattattgcagccaga
gatgcattacttgggcaaaacccaaacgatgagttaattgaaggcgtaattgccgcagta
gatgacaaacacagcgcctttgatttactggacgctgccgcaaaatcgatggatgaagcc
gctatatttacgattcatggcttttgtcagcgaatgttaaaacaacatgcgtttgagtcg
ggtgtggcatttaatttagagtttattttagacgagcgcgacatactgctcgaaacaata
aaagacttctggcgttcgtttgtttatccactgagtgaagacagaaccgatgctatttta
gatgtattttcagcacccgagtctttattttctcaagtagccagcattttaaataaagcc
aatgcgcacataacaccgcaaataaacttagatgatgtatggcaagctcgtgatgaatac
ctagctctcatcccacagtttaaaaaagattgccaagaacacgcatttactgatgctatt
aaaggctcaggcctaagtggtgctaaaacacccgctcgcaaagcaaaccttgcagcgctt
gatgcattttgtgcaagcggtgacatgttttttgagtttggtaccaataagtattcgttt
gaaatatggagtaccgagaacttaagtgacaccactaactataaaaaaaatcagcctttg
tttacgcatccattattaagtcagtttgataccttatcagcgcttaacaacaccatgaac
caaggtttaaaaatagcgttggtacaagaagctgcacgctgggtaaaatcagccattgtt
aagcgtaagcaagagcaaagtgtgatcacccccgacgacttactcactaatttatacact
gcacttaataatgagcaaggtgatgtgcttgcgcaaaaaattgcgcagttatttccggtt
gctatgatagatgagtttcaagacaccgatccgattcagtatggtatttttagtcaaatt
tatggccaagccaatactacacttgccatgataggcgatcctaaacaagctatttacggt
tttagaggcgcagatatatttacgtatataggcgcaaaaaaggcggtagacgagcctcaa
caatttacactgggcactaattttcgctcaagcagcgatatagtaaacagcgtaaatagt
ttatttagcaaacacgacaacagttttatttataacgatgtgattccgtttaataaagtg
agcgctaagggtaaaaaagcagatgaatcgtttttaattgatggtaaaccggccaacgcc
tttgaatttaacgtgtttgtagatgaagccgccgatgaaaaaaataaacccaccagtaaa
ggattagggcaagcacacctagccacttactttgcgaataagatagtcactttattagaa
cacgctaaacaaggcacagcgtgcataggtaaaacgccaataagtgcggcagacatatgt
attttggtgcgtgaccgcgttgaagcgcaaataatgaaaaaggctttgagcgaggctaaa
attgccagtgtgtatctatcccgcgacagcgtgtttagccaagagttaagccatcattta
cttaattttttaactgcactacatggtcaatatgacgagtcattacttcgtggtgtgctc
gcaggaccgttattttgtttaagctataacgatgtatacgcacttgcggataacgaaaac
gcttggcaagagcacttaaacttttttgctcagcttagccacatttggcataagcaaggg
gcaatggccatgcttgagcgattactaagccataatcagttaagtgctaaatggcaaggt
ttaggctacaacgtggagcggtggcttaccgactttagacaccttggtgaaatattacag
caaaaacaaattgagcttgaaggcacattacgcctactgcgctggtttgcgcaaaaggtg
agtcaacaagatggcgaaactgttcaagtacgtttagaaagtgatgccaacttagttaag
attgtgacaatgcatgcttcaaaagggctcgaatatccattggtatttatgccgtttgcc
agtggttatcgtgaaactaaagaagcgctttatcataaaaatggcaaacttatttatgat
ttaagtaaggatgaagacgcactccagcaggctgaaaaagagcgcttagccgaagattta
cgtttattgtatgtagcgcttacgcgcgcagtgcatttttgtgcgctgggtgtttataac
atagggcaagggcaaagtagtcggttagcaattcaaagtagtgcgcttgggcatgtgctg
ttctcagagctcgaaatttcaagcagccaaatatggcgaacacatttaagtgagttttgc
gacaagcacacatttatgtgttatcaacaatttacctctgaagaattacgccaacaggga
accttacagtttgttaataccgaggctgctcagcaaattctgagtgtaaacaatagtaag
gcgcacatagaacgagattggcgtgcaaccagctttagtgcattgagttttaaaaagcac
agcgatgaattagccccagggcgaagcgatgaagatcacgagaaagatgagtttgccgtt
caacaagacgaacttccttcaccttttagttttcctaaaggggcaaagccaggaagctgt
ttacacgaaatttttgaacaaattgattttacaagtcccgttgttcaccccacaaacagc
gagcaaaatttgtcacaggtaattaaacgggcctttgaaaaatatcacattagcgacaca
tggcagccaattgcccagcagtgggtgctcgatgtactaaattgcccattgaatgctcaa
actgatttaagtttaagtaagctagcgcccagtgactgcttagtcgaaatggaatttaat
ttaccgctgactagtttaagtgcccccaagcttaacgaagtgctcattaaacactttggc
tttgtgcaaagtaagctggatttttctcatgttaaagggcttttaaaaggctttgtagat
ttaatattttgctaccaagggaaatattatattttagattataaatctaattacttaggt
aatacgcctaaagattatgaacccgagcagctagagcaagccatgagcagccatcaatac
catttacagtatttaatatataccgtagcgctgcataggctattaaagcaacgcattagt
gactactcaattgagcgtcacttagggggcgtgtattacacctttttacgtggcatgcca
gcagggcaaggtgttttctttaatcaattgacactagagcaagtaactatcttagatggc
ttatttagccaaggagtcatgctatga
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integrated database retrieval system
