Pseudoalteromonas sp. PS1M3: PS1M3_12130
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Entry
PS1M3_12130 CDS
T11044
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psps Pseudoalteromonas sp. PS1M3
Pathway
psps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PS1M3_12130 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psps03400
]
PS1M3_12130 (mfd)
Enzymes [BR:
psps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PS1M3_12130 (mfd)
DNA repair and recombination proteins [BR:
psps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PS1M3_12130 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBW91126
LinkDB
All DBs
Position
1:complement(1364420..1367893)
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AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGQLSGSGLSIAIAEGVKQQENLVLIVTPDTPSALRLETE
LEYLLPNNPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKKEQQSVLIVPVSTLMLRT
APASFIYGSTINFKVGDKLDTHNFRQNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDTIRLFDVETQRSDEKVDKIELLPAHEFPTNESDIERFRIGYREKFGA
SSEQDSVYMQVSKGNWPAGIEYYMPLFFESLATIFDYLPDNTTVMQLGDLEHAADNFWHD
VNVRYENRKVDPLRPLLEPNALYQPIEELFSNLGQFARIRLSLAKLGTKAGNKNLSVCEL
PAIRIDHKQHEPYAAFIDYVTAQKKKKSRILLSVESDGRRESLLNILKPSGLKFKEFDTF
EQFTQSDSDVGLIVSPLEQSVVLGSKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPVVHLDHGVGRYQGLQTIDAAGVITEFVTIIYAGESKLYVPVSALHMLSR
YSGGEESSAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDGQAYR
QFSESFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQ
VAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLENMANGKLDIVIGTH
KLIQQDIKFNDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDVELIREAILREIKRGGQVYFLHNNVETIERVAQELSE
WVPEANVITAHGQMREQELEQIMTQFYHQKYNVIVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNALREGKEPTLENLLQKQTEVDLKLPAL
LPDDYIHDVNARLGMYKRVASCANLGDIDELHVELIDRFGLLPDAAKNLFSLQQLKMQAS
NLGITKIEANPKGGYFEFSQNTKVNPSFIIGLIQSAPHIYKMEGANKLRFAISEANARER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccttgggtaaaatctcaaaaagataaaattcag
tgggggcagctaagcggaagtggtttaagtattgccattgccgaaggtgttaaacaacaa
gagaacttagtattaattgttacacccgacacccccagcgcgctgcgccttgaaacagag
ctagaatatttattacctaataatccggtaatggtatttcctgattgggaaaccttgcct
tacgatcatttttctcctcatcaagatattatttctgcgcgtttagctacattaaatacc
ctaaaaaaagaacagcaaagcgtattaattgtgcctgtgtctacgcttatgctgcgaacc
gctccggcctcgtttatttatggttcgacaataaactttaaagtaggcgataaactcgac
acacataattttaggcaaaacttagagcaagccggttacctaaacgtgcaacaagttatg
gaacatggtgagtacgcaattcgtggctcaatcgtcgatttataccctatgggtagtccg
catccatttaggctcgacttttttgatgacgaattagacacaattcgtctatttgatgtg
gaaacgcagcgctctgatgaaaaagtagataaaattgaactgctaccagcgcatgaattt
ccaacaaatgagtcagatattgagcgtttcaggattggttaccgtgaaaaatttggtgca
agttcagagcaagactctgtttacatgcaagttagtaaaggaaactggccagctggtatt
gaatactacatgccgttattttttgaaagcctagccactatttttgactacctgcctgat
aatacaaccgttatgcagttaggcgatttggaacacgctgcggataatttttggcacgat
gttaatgttcgttacgaaaaccgtaaagtggaccctctgcgcccactacttgaaccaaat
gccttatatcagccaattgaagagctgttttctaatttagggcaatttgcgcgtattcgt
ttatcgcttgccaaactgggcacgaaagcgggtaataaaaatttatccgtatgtgaatta
cctgcaattagaatagatcataaacaacacgagccctatgcggcgtttatagattacgtt
acagcacaaaagaagaaaaaaagtcgcatattattgagcgttgagtcggatggtcgacgt
gaatctttactcaatattttaaaacccagcggtttaaagtttaaagagtttgataccttt
gaacaatttacccaaagcgatagtgatgtaggcttaattgtaagtccgcttgagcaaagc
gttgtgcttggctctaaaccttcattatcaattattaccgaacaagagctgctaggtatt
aaagtctcgcagcgcagacgccgtaaacataagtacgaagcaagccaagacgccctaatt
cgtaacttagccgagcttaaagaaggtcagcctgttgtgcatcttgaccacggtgttggc
cgctatcaaggtttacaaactattgatgcagcaggtgtaattacagaatttgtgaccata
atatacgctggtgaatctaaattgtatgtgcctgtgtcggcactacatatgcttagccgt
tactcaggcggcgaagaaagcagtgcaccactgcataagctcggctctgatgcgtgggaa
aaggcaaaaaaacgtgctgcagaaaaagttcgtgatgtagccgcagagttacttgatata
tacgcacagcgccaagctaaaccaggcaataaatttaccctagacggacaagcctatcgc
cagtttagtgaaagctttccgtttgaagaaaccgacgaccagcggaatgcaattgaagct
gtcttaggcgacatgcaatcaaaacaagcgatggatcgtttagtgtgcggtgatgtaggc
tttggtaaaaccgaggtcgctatgcgtgcagcttttgttgctgttaacgatggtaaacaa
gttgccattttagtgcccactaccctgcttgcgcagcaacactatgagaattttaaagac
cgttttgctgactttcctatcgaagtgggtgtgctttctcgttttaattcaaccaaagag
caaaaagacacgctagaaaatatggcgaatggcaagctagacattgttattggtacccac
aaacttattcagcaagacattaaatttaacgatttagggctactcatcgtagatgaagag
catcgatttggggtacgccaaaaagaaaaaattaaagcgctacgtgcagatgtcgatatt
ttaacgcttaccgcaacgcctattcctcgaacgctcaatatggcaatgagtggcatgcgc
gacttatctattattgctacaccaccggccaaacgcttggcggttaaaacatttgttcgc
caacgtgatgtggagcttattcgcgaagctattttgcgtgaaattaaacgtggtggccaa
gtgtactttttgcacaataacgttgaaacaattgaacgcgtggcgcaagaattaagtgaa
tgggtacctgaagcaaatgtaattaccgctcatgggcaaatgcgcgagcaagagcttgag
caaataatgacccagttttatcaccaaaaatacaatgtaattgtgtgtacaaccattatc
gaaaccggtattgacgtacccacagcaaataccattattatggatagagccgacaaacta
ggcttagcacaattacaccaattgcgtggtcgtgtaggccgaagccaccatcaggcatat
gcctatttgctcacaggcgaccctaaagcattatcaaaagatgccagcaaacgtctacaa
gcaattgaatcattggaagatttaggtgctggttttgcacttgctacacacgatttagaa
attcgtggtgcaggtgaattattgggcgacgatcaatctgggcaaatgcaaactattggc
tttagcttgtatatggaaatgcttgagcaagcagtaaatgcactgcgtgaaggtaaagaa
cccactcttgaaaacctcttacaaaaacaaaccgaagttgacttaaaactgcctgcatta
ctgcctgatgattatatacatgacgtaaatgcacgattaggtatgtacaagcgtgtagct
agttgtgctaacctaggcgacattgatgagttacatgtagaactaatagaccgatttggt
ttattacctgatgcagctaaaaacttatttagtttgcaacaacttaaaatgcaagccagt
aatttagggataacaaaaatagaggcaaaccctaaaggcggctactttgaatttagccaa
aataccaaggttaatcctagcttcattattgggctgatacaaagtgcaccgcatatttat
aaaatggaaggcgcaaataaattgcgcttcgcgattagtgaggcaaatgcccgcgaacgc
ttaaaaatggtcactgctatgattgcagatttcgaaaaaaaggttagccattaa
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