Pseudoalteromonas sp. PS1M3: PS1M3_13730
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Entry
PS1M3_13730 CDS
T11044
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psps Pseudoalteromonas sp. PS1M3
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psps03032
]
PS1M3_13730 (topA)
03400 DNA repair and recombination proteins [BR:
psps03400
]
PS1M3_13730 (topA)
Enzymes [BR:
psps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PS1M3_13730 (topA)
DNA replication proteins [BR:
psps03032
]
Prokaryotic type
DNA Topoisomerases
PS1M3_13730 (topA)
DNA repair and recombination proteins [BR:
psps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PS1M3_13730 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Toprim_2
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
BBW91286
LinkDB
All DBs
Position
1:1530584..1533292
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AA seq
902 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSIGHVRDLPTSGSSKAKVPATKTPAEVRKMP
PDEKAAYKQQRDYTNLVARMGIDPEKGWQPHYEILPGKEKVVQELQKLAEKADQIYLATD
LDREGEAIAWHLQEIIGGEPEKYKRVVFNEITKNAIQQAFETPGELNTDMVFAQQTRRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSES
DLRLEVTKQADKPFKPVNEAQIKEAVKSLESAEYKVVNVEEKPSKSRPSAPLITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVEMCREYVTEQFGSKYLPKEP
INYSSKGNAQEAHEAIRPSSVTVLSGHLEGVDADAKKLYELIWRQFVACQMVPAEYDLTT
LTVAANDFQLKAKGRVLRFDGWTKVQPAVRKKNEEDQSLPAVAVGETLTLVELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFTDLMNFDFTAKMEGRLDDIAEGERVWTQVLDKFYADFSTQLTIAKDEPEQGGMRLNE
MVETDIECPTCSRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLVSGDEAVAADVEDEE
TEKLMQMKRCPVCETAMDSYLIDETRKLHVCGNNPACKGHIVEQGTFKIKGYDGPIIECD
KCGSDMELKSGRFGKYFGCNNEECKNTRKLLKNGEAAPPKEDPVHIPELECEKSEAYFVL
RDGAAGIFLAANTFPKSRETRAPKVEELKRFRDRISPKFYYLADAPGQDPDGNLAVVRYS
RKNKAQYVMTEIDGKATGWTAHYEAGKWVEEAKKKAAPKKKAAAKKAPAKAKPKAKAKKD
EE
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctagtaattgtagagtcacctgctaaggctaaaacaattaataaatac
ttaggtaatgactttatcgtaaagtccagtattggacatgtacgagacttacctacctca
ggttcgagcaaagcaaaagtgccggcaactaaaacgccagcagaagtgcgtaaaatgcca
ccggatgagaaagcagcttataaacagcaacgagattacacaaacctggttgcacgtatg
gggattgatcctgaaaaaggctggcagcctcattacgaaatcctaccgggtaaagaaaag
gttgttcaagaattacaaaagctggccgaaaaagcagaccaaatatacctcgcaacggat
ttggatagagaaggggaagcaattgcttggcaccttcaagaaatcattggtggtgaacca
gaaaaatacaaacgcgttgtttttaacgaaattactaaaaatgccattcagcaagcgttt
gaaacaccgggtgagctaaatactgacatggtatttgctcagcaaactcgtcgcttttta
gaccgtgttgtgggctttatggtatcgccgcttctgtgggcaaaagtagcgcgtggttta
tctgcagggcgagtacagtcagttgcagtacgattactcgtagagcgtgagcgtgaaata
aaagcgtttattccagaagagttctgggatattcatgcagatgttaaaaatagcgagtct
gacttacgtttagaagtcactaaacaagcagacaagccatttaaacctgtaaatgaagca
cagatcaaagaggcggtaaaaagccttgagagtgcagaatataaagttgttaatgttgaa
gaaaaaccgagtaaaagtcgcccaagtgcacctttaatcacatcaacaatgcagcaagct
gccagtacacgtttaggttatggtgttaaaaagaccatgatgctagcgcagcgattgtac
gaaggtggttatattacttatatgcgtactgattcaacaaacttatcgaaagatgctgtt
gagatgtgtcgtgaatacgttacagagcagtttggctcaaaatatctgccaaaagaacca
attaactacagctctaaaggtaatgcacaggaggcacacgaagcgattcgtccttctagc
gttactgtactgtctggacaccttgaaggtgtagatgccgatgctaaaaagctctacgaa
ttaatatggcgtcaatttgtagcgtgccaaatggtacctgcagagtacgatttaacaacc
ttaactgttgcggctaacgattttcagcttaaggcaaaagggcgtgtgcttcgttttgat
ggttggaccaaagtgcaaccagctgttcgtaagaagaacgaagaagatcaatcactccca
gctgttgcagtgggcgaaacactcacacttgttgaacttgatcctaaacagcacttcact
aagccaccagcgcgttttagtgaggcaagtttagtaaaagagttagaaaaacgaggaata
ggtcgtccatctacttatgcttctatcatttctacaattcaagaccgtggctatgtgcgg
gtagaaaaccgtcgtttctttgctgaaaaaatgggtgaaattgtaaccgatcgtctggtt
gaaaactttaccgatttaatgaactttgatttcacagcaaaaatggaaggccgtttagat
gatatagcagaaggtgagcgtgtatggacgcaagtacttgataagttttacgctgatttt
tcaacacaattaaccattgcaaaagacgaaccagaacaaggtggcatgcgtcttaatgaa
atggttgaaactgatatagagtgtcctacctgtagccgtaaaatgggtattcgaactgct
tcaaccggggtgtttttagggtgtactggttataacttaccacctaaagaacgttgtact
acaactatgaatttagtgtcgggcgatgaagcggttgccgctgatgttgaagacgaagaa
acagaaaaattaatgcaaatgaagcgctgtcctgtttgtgaaacagcgatggattcgtat
ttaatcgatgaaacccgcaagttacatgtatgtggtaacaatccagcgtgtaaagggcat
attgttgagcaaggcacgtttaagattaaaggctatgacggtccaattattgagtgtgat
aaatgcggctcagacatggaacttaaatctggacgttttggtaaatactttggctgtaat
aacgaagagtgtaaaaatacacgtaagttactaaaaaatggtgaagccgctccgcctaaa
gaagatccagttcatattcctgaattagaatgtgaaaaatcagaagcctattttgtatta
cgagatggtgctgcaggtatatttttagctgcaaatacattccctaaatcgcgtgaaact
cgagcacctaaggttgaagagttaaaacgatttagagatcgtatatcccctaaattctac
tatttagcggacgcaccaggtcaagacccagatggtaatcttgctgttgtgcgctacagt
cgtaaaaacaaagcgcagtatgttatgactgagatagacggcaaagcaactggttggact
gctcattatgaagcaggtaagtgggtagaagaagccaagaaaaaagctgcacctaaaaag
aaagcagctgctaaaaaagcccctgctaaagcaaaacctaaagcaaaagcaaaaaaagat
gaagagtaa
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