Pseudoalteromonas sp. PS1M3: PS1M3_21480
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Entry
PS1M3_21480 CDS
T11044
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psps Pseudoalteromonas sp. PS1M3
Pathway
psps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS1M3_21480 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psps03019
]
PS1M3_21480 (deaD)
03009 Ribosome biogenesis [BR:
psps03009
]
PS1M3_21480 (deaD)
Enzymes [BR:
psps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PS1M3_21480 (deaD)
Messenger RNA biogenesis [BR:
psps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PS1M3_21480 (deaD)
Ribosome biogenesis [BR:
psps03009
]
Prokaryotic type
rRNA helicases
PS1M3_21480 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBW92061
LinkDB
All DBs
Position
1:2372163..2373965
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AA seq
600 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKVVEEKRIAALQAKLSIALENKDITFFNEVATNMAEKLDLPLENLA
GALLCLAQQQSPIKVEEVKIQPRERNERNSRNDRGDRGRRNERGGERSERKPRERNSRDA
GPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDQHSTVQLPQNMPKDVLD
HFQKVFICKRPMGMTITQDQGPAEPRGERPSGDRKRNDGPRGDKRSGPRKERRPVSFTAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttgaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcacaaacgggtacaggtaaaaccgcagcatttgca
ctgccgttactaaacaatattgacccgtctgtgaaacagccacagatccttgtactcaca
cctacacgtgagcttgcgatccaagttgctgaggcatttgaacaatatgcaaaaggtact
cgtggtgttgaagtattagcactatacggtggccaaagctacagcattcaattaagcgca
cttcgtcgtggcgctcaaatcattgttgctactccgggtcgattaatcgatcatattaat
cgtggcactatcaagtttgatgctcttcaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgttgaaaacatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgaccatgcctaagcaaattcaaaacatcagcagcaaatat
atgaataaccctgaacaggttcatatttctgcgcgtaactcgacagtatcttctgttgag
caagtgttttggaacgcaagcgtacataaaaacaaagcgattgttcgctttttagaagct
gagcaatacgaaggtgctattgttttcgtacgtacacgtaacgataccgttcaacttgct
gaattattagagcgcgaaggtttctcggcagctccgcttaatggtgacatgaaccagcaa
gcacgtgaacgcactgttgaccgcttaaaaagtggcatgctgaacgttgttattgcaaca
gacgtagcagctcgtggtcttgatgtagaccgtttaagcttagttatcaactacgacatt
ccacaagattctgaagcctacgttcaccgtattggtcgtacaggtcgtgcaggtcgtact
ggtaaagcaattttatttgttaagcataacgaacgttacttacttaaaaatatcattcgt
cataccaagtctgaaattgctcaggttgaattaccaacagctaaagttgttgaagaaaaa
cgtatcgctgcgttacaagcaaaattaagtattgcgcttgaaaacaaagacattacgttc
tttaacgaagtggctactaacatggctgaaaagcttgaccttcctcttgaaaacttagcg
ggtgctttactgtgtttggcacagcaacagtcgccaattaaagttgaagaagttaagatt
caaccacgtgagcgtaatgaacgcaattcacgcaatgaccgtggtgatcgcggacgtcgt
aacgaacgtggtggtgaacgttctgaacgtaaaccgcgcgagcgtaacagccgtgatgca
ggccctatggatacttaccgtatcgaagtaggtcgtgagcatggtgttcaggttaagaac
attgttggcgcaattgctaacgaagctgatatctcaagcaagtttattggtgacattcgt
ttacacgatcaacacagcactgttcagttaccacaaaacatgcctaaagatgtactggat
catttccaaaaagtgtttatttgtaaacgcccaatgggtatgacaattacacaagatcaa
ggcccagctgaaccacgtggcgaacgcccatctggtgatagaaaacgtaacgatggccca
cgcggtgataagcgtagcggacctcgtaaagaacgtcgcccagttagctttaccgctaag
taa
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