Pseudoalteromonas sp. PS1M3: PS1M3_27140
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Entry
PS1M3_27140 CDS
T11044
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psps Pseudoalteromonas sp. PS1M3
Pathway
psps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS1M3_27140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psps03019
]
PS1M3_27140
03400 DNA repair and recombination proteins [BR:
psps03400
]
PS1M3_27140
Enzymes [BR:
psps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PS1M3_27140
Messenger RNA biogenesis [BR:
psps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PS1M3_27140
DNA repair and recombination proteins [BR:
psps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PS1M3_27140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BBW92627
LinkDB
All DBs
Position
1:2975059..2976882
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AA seq
607 aa
AA seq
DB search
MNTSTLPSSTLVRKPETVLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQ
IPALVLEGVTIVISPLISLMQDQVAQLQALGVKAAYVNNSLAREEQQRVYQQLHQGLIKL
LYVAPEKVLQRDFLERLSHLKISLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMM
ALTATADKATRFDIVEQLKLQQPYIHTGSFDRPNIRYTIEEKFKPMVQLLRYLKEQKNQS
GIIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGM
GINKPNVRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRFFEDIDDE
QRRRVEEQRFNAMASFAEAQTCRRQILLNYFSEYQREQCGNCDICLNPPKSFDGTLVAQQ
ALSCVYRAEQRFGLGYIVELLRGANTSRIRDNNHHQLSTYGIGKDRSSEFWLSILRQLIH
QGLLSQDITQGASLRLTEAARAILKSEYALQLAEPRLQAKHVYQDKLAQFNYDKKLFARL
RSLRKELADADDVPPYVVFNDKTLAEMAQLMPTTDSEFLKVSGVGFTKLNKYGEAFLTAI
RNYLVTQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatctacactaccttcaagcaccttagtgcgaaaacccgagactgtcctcaag
caagtgtttggttacagcgagtttcgagatggccaaaaagccgttattgatgccgcttta
aatgctcaggacacacttgttttgctacccactggtggcggaaaatctgtgtgttatcaa
attccggcgttagttcttgaaggggtgaccattgttatctcgccacttatttcacttatg
caagaccaagtcgcgcaacttcaagctttgggtgtaaaagcggcatatgttaataacagc
ctagctcgcgaagaacaacaacgtgtttatcagcaacttcatcaagggcttattaaacta
ttgtatgtagcccccgaaaaagtattacaacgtgattttttagagcgattatcgcattta
aaaataagcttatttgcgatcgatgaagcgcattgtgtgtcgcattggggtcatgatttt
agaccgcattattttcgcttaaacgaacttaagcaacgctttgcccatgtgcccatgatg
gcccttacagcgacggccgataaagccacacgctttgatattgttgaacagttaaaactt
cagcagccttacattcatactggcagctttgatagacctaacattcgttacaccatagaa
gaaaaatttaaacctatggtgcaactattacgctacttaaaagaacaaaaaaaccaaagt
ggcattatttattgcactagccgaaagcgtgttgacgacatagcagaaaaacttgccgat
gcaggccttaatgcagccgcttaccatgcaggtatgagcaacgaacaacgccagtttgtg
caaacaggttttgcccgtgacgatattcaaatagtggtggcaaccgtggcttttggtatg
gggattaataaacccaatgtacgttttgttttgcactacgacattcccaaaagtatagaa
gcatactatcaagaaacaggaagagcaggacgcgatggcttagccgccgaagcaattatg
tactttgatcctgccgatataggccgtgtaaggcgcttttttgaagatattgacgacgag
caacgtcgccgtgtagaagagcagcgctttaatgccatggcaagctttgctgaggcacaa
acgtgccgccgtcagatactacttaactactttagtgaataccaacgcgagcaatgtggt
aactgtgatatttgcttaaacccaccaaaaagctttgacggtacgcttgttgcccaacaa
gcgctttcgtgtgtatacagagctgaacagcgatttggtttaggatacattgtagagcta
ttacgtggcgccaacacgagtcgtattcgcgataacaaccaccatcagttgagcacttac
ggcataggtaaagacagaagcagtgagttttggctgagtattttacgccaattaatccac
caaggattactaagccaagatataacacaaggcgcctctttgcgcttaaccgaagccgcc
cgcgctatattaaaaagcgaatacgcgctgcaattagctgaacctcgcttacaagcaaaa
cacgtatatcaagataagctagcgcaatttaattatgataaaaaactatttgctcgcttg
cgttcattacgtaaagaacttgcagatgccgacgatgtgccaccgtatgtggtatttaat
gataaaacgttagccgaaatggcgcagctaatgcccacgaccgacagtgagtttttaaaa
gtgtcaggcgttggttttaccaagttaaacaaatacggcgaagcttttttaacagcaatt
cgcaactacttagtcacacaataa
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