Pseudoalteromonas sp. PS1M3: PS1M3_31200
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Entry
PS1M3_31200 CDS
T11044
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psps Pseudoalteromonas sp. PS1M3
Pathway
psps03420
Nucleotide excision repair
psps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PS1M3_31200
03430 Mismatch repair
PS1M3_31200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psps03400
]
PS1M3_31200
Enzymes [BR:
psps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PS1M3_31200
DNA repair and recombination proteins [BR:
psps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PS1M3_31200
MMR (mismatch excision repair)
Other MMR factors
PS1M3_31200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
DUF3553
SAP18
Motif
Other DBs
NCBI-ProteinID:
BBW93033
LinkDB
All DBs
Position
1:3406660..3408825
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AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRTRVEETLKAPVGGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQL
RMIKRLLKSMNIDDKKWPAKQFGWYISAKKDEALRPKDIQAYDINEQMMLRVYAAYQEAC
DRAGLVDFAEILLRSYEVLKNNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDTS
SIMIVGDDDQSIYGWRGAKIENIKRFLTDFDAETIRLEQNYRSTATILKASNALIKNNSE
RMGKSLWTDGNEGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRSNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAIVEQQHLSGRAAGAVTKFVELVEHIEDKISDLTLQEQAK
YTIQTSGLMAMYQAEKGEKGRARVENLEELISACDQYELPEEEEFSSPLQGFLAYTSLES
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRIKTQVSRPPAAGRFSAS
VSHAAFEDSGFNLGQRVLHAKFGIGTVLNYEGSGAQSRVQVNFDDLGSKWLVTAYARLQA
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcagaattactcgacggcttaaatgacaaacaacgcgatgccgttgcagcc
ccattacaaaacatgctggttttagccggtgctgggtctggtaaaacacgagtgttagtt
catcgtatcgcgtggcttatgcaagttgaacaagcatcagcttatagtatttttgcggta
acctttaccaataaagctgctaaagaaatgcgcacgcgagtagaagagaccttaaaagca
ccggttggcggaatgtggattggtactttccatggtttatcacaccgaattttacgcgct
catcaccgtgaagctaacttaccagaagcctttcaaattttagattctgatgaccaactt
cgtatgatcaagcgcttattaaaatcaatgaatattgatgataaaaagtggcctgcaaaa
cagtttggttggtacataagcgctaaaaaagacgaagcacttcgccctaaagatattcaa
gcttatgatataaacgagcaaatgatgctgcgtgtatatgccgcctaccaggaagcgtgt
gacagggctggtttggtcgattttgctgaaatactgctacgcagctatgaagtattaaaa
aataacccgacgttacttcgccactaccaacagcgctttgcccacatgctagtagacgag
tttcaagatactaataccattcagtacgcatggttaaagttacttgccggcgacacaagc
agcataatgattgttggcgacgacgaccaaagtatttacggctggcgcggcgctaaaata
gaaaacataaaacgttttttaactgactttgatgccgaaactattcgccttgaacaaaac
taccgttcaaccgcaactattcttaaagcatctaatgcgcttataaaaaataactccgag
cgtatgggtaaaagcttatggaccgatggtaacgaaggcgagcctatatcaatttatgcc
gcctttaacgagctagacgaagcccgctttgtgagtagcaaattacgtagctggttaaat
gctggtaacgcgttgcaagacgccgctattttataccgtagtaacgcacaatctcgtgta
ctcgaggaagccatgctgcaagaaggcttaaaataccgtatttacggtggtatgcgattc
ttcgagcgtcaagaaattaaagatgcgctatcgtacttacgcttagtaggtaatcgccaa
gacgatgccgcatttgagcgtgtaattaatactcctgctcgcggtattggcgataaaaca
ttaagtcatatacgtgattgcgctcgtgctgagtcacttccgctttggtacgcagctaaa
gctattgttgaacaacagcacttatcaggccgagcagctggcgctgtaacaaagtttgta
gaacttgttgagcacattgaagacaaaattagcgatctcaccctacaagaacaagctaaa
tacacaattcaaacctctggccttatggctatgtaccaagctgaaaaaggcgaaaaaggc
cgtgcccgcgtagaaaacttagaagagcttataagtgcctgcgatcagtacgaactccct
gaagaagaagagtttagctcaccactacaaggctttttagcctatacctcgcttgaatct
ggcgaaggccaagccgatgagcacgaagacgcggtacaaatgatgacgcttcactcagct
aaaggcttagagttcccgcttgtgtttatggtgggcgttgaagaaggcatgttcccatcg
cagcaaagtaatgaagagtctggccgcttagaagaagaacgccgcctttgttatgtaggc
atgacccgtgcaatggataaactatacattagccatgccgaaagccgccgcctttatgga
caagagaagtaccatagtccttcacgttttttacgcgaaatccctgaagactgcgttgaa
gaaattcgtattaaaacgcaagtttcgcgaccaccggcagctggtcgctttagtgcatca
gtaagccatgccgcctttgaagacagcggctttaacttaggtcaacgtgtactgcatgct
aagtttggtattggcacggtacttaactatgaaggtagcggtgcacagtcgcgtgtacag
gtaaactttgacgaccttggcagtaaatggctagtaacggcttatgcacgattacaagct
gtataa
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