Pseudoalteromonas sp. PS1M3: PS1M3_34220
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Entry
PS1M3_34220 CDS
T11044
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psps Pseudoalteromonas sp. PS1M3
Pathway
psps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS1M3_34220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psps03019
]
PS1M3_34220
03400 DNA repair and recombination proteins [BR:
psps03400
]
PS1M3_34220
Enzymes [BR:
psps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PS1M3_34220
Messenger RNA biogenesis [BR:
psps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PS1M3_34220
DNA repair and recombination proteins [BR:
psps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PS1M3_34220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
TniB
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BBW93335
LinkDB
All DBs
Position
2:149672..151600
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AA seq
642 aa
AA seq
DB search
MNTPLLQSLEQHFGFNQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTAMHLENLT
LVVSPLLALMKDQISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKN
ERFREFISQVALSMLVVDEAHCISEWGHNFRPDYLKLPRYREELNIPLVLLLTATATKKV
KRDMSERFNIAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVRAQNGPGIVYVTLQQ
SAEQVANTLSAQGIQAVAYHAGLEDTLRWHIQDDFMAGKINVVVATIAFGMGVDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGIEYVIN
DIRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQYAYYADFKYKFLVDKNE
LLSQFDEQRQAFLTQIFSYTDFKKIWGTLNFDTLTQAAQVDRKRVVAALDYLAEKNLITL
ETKRITQVYKVHSEVINNPELAQQLHHYFADKEQAEIKRIAALVRFFELQTCLSYNLARY
FDDQNAPAQCGHCSVCRGNAVKLEYSLAPVTIADEVIYQKVDEFLAHMATKGVHNVGVET
QCRFLAGMSVPLFARNKVRQLSGFALCEQQRYSDIKATLLGR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgccgcttttacaatcacttgagcaacattttggttttaaccagtttagagca
gggcagcagcaaactatagagcagcttttaaatgggcaatcgtcccttgctatattccct
acagggtcgggtaagtcgttgtgttatcagctaacggctatgcatttagaaaacttaacg
ttagtggtgtcgccattactagccttaatgaaagatcaaattagttttttaaatagcaaa
ggtatttacgcggcaagccttgattctagccaagaccaaatgcaaagcagcaccgtaatg
aacgatgtgcgaaatggtaaaattaaagtgttaatggtgtcggtagagcgctttaaaaac
gagcgatttagagagtttataagccaggttgcgctgtctatgctggtggtagatgaggcg
cactgtatatctgaatgggggcataacttcagacctgactacttaaaactaccgcgatat
cgcgaagagctaaatattccactagtactattgcttaccgccaccgccactaaaaaagta
aaacgcgacatgagcgagcgttttaatattgcccctgagtgcattgtacaaactggcttt
taccgcgctaacctcgatttaagcgtgctaagtgtaaaaacggctgataaaaacaccgaa
cttacaaacatagtgcgtgcgcaaaatggcccaggtattgtgtatgtaacactgcagcaa
agtgctgagcaagtggctaacacgctaagtgcgcaaggtattcaggcggttgcgtatcat
gcagggcttgaagatacactccggtggcacattcaagatgattttatggcgggtaaaatt
aacgtagttgtagcaactatagcctttggtatgggcgttgataaatcagacattcgcttt
gttattcattacgatttaccaaaatcgattgaaaactacagccaagaaattggccgcgca
gggcgcgatggcaacccatcaaactgctacacgcttgctaatttagatggcctaaacaca
gtagaaaactttgtatatggcgacacccctgagctgagtggcattgaatatgtaattaac
gatattcgccaagcccaacagcaatgggaaatgcaagaatacagcctttcaagcgaaagt
aatattaggcaactggcacttaaaacattactggttcaacttgaaatgcaaggcgcaatt
acgccgcagtacgcctattatgccgattttaaatacaagttcttggttgataaaaacgag
ctacttagccagtttgacgagcagcgccaagcttttttaacgcaaatatttagctatact
gattttaaaaaaatatggggcacgctcaattttgacacccttacccaagccgcgcaggtt
gaccgtaaacgggttgtggccgcgcttgactacctagctgaaaaaaaccttataacgctt
gaaaccaaacgcattacccaagtatataaagtgcatagtgaagttataaataacccagag
cttgcccagcagttacaccactactttgctgataaagaacaagctgaaataaaacgaatt
gctgctttagtgcgcttttttgagctacaaacttgcctgagttataacttagcgcgctac
tttgacgaccaaaacgcgccagcgcaatgcgggcattgcagtgtatgccgtggtaatgct
gtaaaactagaatactcactagcgcctgtaactattgcagatgaggttatttatcaaaaa
gtagatgagtttttggcgcatatggccacaaagggagttcataacgtgggtgttgaaacc
cagtgccgttttttagcgggtatgagcgtgccattgtttgctcgtaataaggtacgccaa
ctcagcggatttgcgctttgtgagcaacagcggtatagcgatataaaagctacactgctt
ggcagatag
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