Pandoraea sputorum: NA29_04580
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Entry
NA29_04580 CDS
T03554
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pspu
Pandoraea sputorum
Pathway
pspu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pspu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NA29_04580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspu03021
]
NA29_04580
Transcription machinery [BR:
pspu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NA29_04580
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_24
Sigma70_ECF
HTH_23
HTH_40
LacI
GerE
HTH_10
Xre-like-HTH
Trp_repressor
HTH_Crp_2
RepL
Motif
Other DBs
NCBI-ProteinID:
AJC18562
LinkDB
All DBs
Position
complement(59154..59684)
Genome browser
AA seq
176 aa
AA seq
DB search
MRDDNGGRKDHARADASGVASLYYDHHGWLRNWLHRKLGNHGDAADLAHDTFVRLLSKDT
PVCPREPRAFLTVVAQGLVANLHRHRKIEAAYLDALAAQPEAVAPDPETRAILLQTLIDI
DRRLDGLPPVVRRVFLMSQLDGLAQRDIAETVGISIATVQRHIVKALHACCFGDAA
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgacgacaacgggggacgcaaagatcacgcacgcgcggacgcgtccggcgtggct
tcgctctattacgatcatcacggctggctacgcaactggctgcatcgcaaactcggcaat
cacggcgacgccgccgacctcgcgcacgacactttcgtgcgcctgctcagcaaggacacc
cccgtctgcccgcgagaaccccgcgcctttctcaccgtcgtggcgcaagggctcgtcgcc
aatctgcatcgccatcgcaagatcgaagccgcttatctcgacgcgctcgccgcacagccc
gaagccgtcgcgcccgatcccgagacccgcgccatcctgctccagacactcatcgacatc
gatcgtcgcctcgacggcctgccgcctgtcgtgcgccgcgtcttcctcatgtcgcaactc
gacggcctcgcacagcgcgacatcgccgagacggtcggcatctccatcgccaccgtgcaa
cgccatatcgtcaaagccctgcacgcctgctgcttcggagatgccgcatga
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integrated database retrieval system