Pandoraea sputorum: NA29_13360
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Entry
NA29_13360 CDS
T03554
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pspu
Pandoraea sputorum
Pathway
pspu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NA29_13360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspu03019
]
NA29_13360
03016 Transfer RNA biogenesis [BR:
pspu03016
]
NA29_13360
Enzymes [BR:
pspu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NA29_13360
Messenger RNA biogenesis [BR:
pspu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NA29_13360
Transfer RNA biogenesis [BR:
pspu03016
]
Prokaryotic type
tRNA degradation factors
NA29_13360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH_KhpA-B
DUF5813
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
APD12390
LinkDB
All DBs
Position
2070566..2072722
Genome browser
AA seq
718 aa
AA seq
DB search
MQMFNKVVKSFQWGQNTVRMETGEIARQASGAVLVDMDDTVVLATVVGAKKAKAGQDFFP
LTVDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFYNEVQVVVQVV
SLNPEVPADIPALIGASAALAISGLPFNGPVGAARVAYVDSQYVLNPSREQIAKSKLDLV
VAGTEQAVLMVESEAQELPEDVMLGAVVFGHEQMQTAINAIHELVRDGGKAEWEWAPAAK
NDALISQVGELAEGQLRAAYQTREKQARTQQLRAVSTDVIAKLAEAAAAKGEAAPDDIEV
GNILFDLEAKIVRSQILAGEPRIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVV
ATLGTKSDEQIIDALQGEYRDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALVA
CLPGADDFGYTVRVVSEITESNGSSSMASVCGGSLAMMDAGVPMTSPVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI
LGKMTEAQSGVRTELSEFAPRMVTIKINPEKIRDVIGKGGSVIRALTEETGTSIDISDDG
VVTIASPSAEGIAEAKRRIELITVEVEVGQVYDGTVLKLLEFGAIVSVLPGKDGLLHISE
IANERIKDINEYVKEGQAVRVKVIQQDDKGRLRLSHKALTEEEKQGGALLVKREGDAQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaatgttcaataaagtcgtcaagtctttccaatggggacaaaacacggttcgcatg
gaaaccggtgagatcgctcgccaggcatccggtgctgtgctcgtcgacatggacgatacc
gtcgtgctcgccacggtcgtgggtgcgaagaaggccaaggctggccaggatttcttcccg
ctgacggtcgactaccttgaaaagacttacgccgccggcaagatcccgggtggcttcttc
aagcgtgaaggccgtccgtcggaaaacgaaacgctgacgtcgcgcctgatcgaccgtccg
atccgcccgctgttcccggaaggcttctacaacgaagtccaggtggtggtgcaggtcgtc
tcgctgaacccggaagtcccggccgatatcccggccctgatcggtgcttcggccgcgctg
gccatctcgggtctgccgttcaacggcccggtcggcgccgcccgcgttgcctacgtcgac
agccagtacgtgctcaacccgtcgcgcgagcagatcgccaagtcgaagctcgacctggtc
gtcgccggtacggagcaagctgtgctgatggtggaatcggaagcacaagagctgccggaa
gacgtgatgctgggcgcagtcgtgttcggtcacgagcaaatgcaaacggccatcaacgcg
attcacgaactcgtgcgcgacggtggcaaggctgagtgggaatgggccccggctgccaag
aacgacgcactgatctcgcaagtgggcgagttggccgaaggtcaactgcgcgctgcatac
cagacgcgtgaaaagcaagcgcgtacgcaacaactgcgcgctgtgagcaccgacgtgatc
gccaagctggccgaagccgcagcggctaagggcgaagctgcaccggacgacatcgaagtc
ggcaacatcctgttcgatctggaagccaagatcgtccgtagccagatcctggcgggtgag
ccgcgtatcgacggccgcgacacgcgcaccgtgcgcccgatctcgatccgcaccggcgtg
ctgccgcgtgcccacggttcggcgctgttcacgcgtggcgaaacgcaggcactcgtggtg
gccacgctgggcaccaagagcgatgagcagatcatcgacgcgctgcaaggcgagtaccgc
gatcgcttcatgctgcactacaacttcccgccgttctcgacgggcgaaacggggcgcgtg
ggttcgcccaagcgtcgcgaaatcggtcacggccgtctggccaagcgcgcgctggtcgcg
tgtctgccgggtgccgacgatttcggttacaccgtgcgtgttgtgtcggaaatcaccgag
tcgaacggttcgtcgtcgatggcatcggtctgcggcggtagcctcgccatgatggacgcc
ggtgtgccgatgacctcgccggtcgccggtatcgccatgggtctgatccttgaaggcaac
aagtttgccgtgctgaccgacatcctcggcgatgaagatcacctgggcgacatggacttc
aaggtggccggtacgtcgaatggcgtgaccgcactgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctggcgcaagccaaggaaggccgtctgcatatc
ctgggcaagatgacggaagcccagtctggcgtgcgtacggagctgtcggaattcgcaccg
cgtatggtcaccatcaagatcaatccggaaaagatccgtgacgtgatcggtaagggtggt
tcggtgatccgcgcgttgacggaagagactggtacgagcatcgacatttcggacgacggc
gtggtgactatcgctagcccgagcgccgaaggtattgccgaagcgaagcgtcggatcgaa
ttgatcacggtggaagtcgaggtcggtcaggtctacgacggtaccgtgctcaagctgctc
gagttcggcgccatcgtctcggtgctgccgggtaaggacggtctgctgcacatctcggaa
attgccaacgagcgcatcaaggacatcaacgagtacgtcaaggaaggtcaggccgtgcgc
gtgaaggtgatccagcaagacgacaagggtcgtctgcgtctgtcgcacaaggcactgacc
gaagaagagaagcaaggcggtgcactgctggtcaagcgcgaaggcgacgcccagtaa
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integrated database retrieval system
