Pandoraea sputorum: NA29_20300
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Entry
NA29_20300 CDS
T03554
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pspu
Pandoraea sputorum
Pathway
pspu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pspu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NA29_20300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspu03021
]
NA29_20300
Transcription machinery [BR:
pspu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NA29_20300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
GerE
HTH_24
PhyR_sigma-like
HTH_10
HTH_40
HTH_7
HTH_29
HTH_Crp_2
DUF2089
DUF434
TnsD
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AJC17727
UniProt:
A0A239SNN3
LinkDB
All DBs
Position
3661151..3661669
Genome browser
AA seq
172 aa
AA seq
DB search
MQTQGTLPSTVEMLYCHHHSWLRGWLHRRLGSAEQAADIAHDTFVRLLGSERGPAAFDEP
RAYLTTVAQNLVSNHWRRQKLERAYLDALAQVPREVEWSPETRAIMLETLLELDRLLDGL
PTVVRQAFLYSQLDGKTHAQIAATLGISIPTVKRYLAKALQRCYFADLSFLD
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacccagggcaccctcccctctaccgtcgagatgttgtactgccatcaccattcg
tggctgagggggtggttgcatcgacgtctgggcagtgccgaacaagcggcggacatcgcg
cacgacaccttcgtgcgattgctcggcagcgagcggggccccgccgcgttcgacgaaccg
cgcgcgtatctcacgaccgttgcacagaatctcgtctcgaatcactggcgacgtcagaag
ctcgaacgcgcatatctcgatgcactcgcacaggtgccgcgcgaagttgaatggtcgccc
gaaacgcgcgccatcatgcttgagacgctactggaactggatcgactcctggacggcctg
ccgaccgtcgtgcggcaggcgtttctgtattcgcagctcgacggaaaaacgcacgcccag
atcgcggccacgctcggcatctcgattccgacggtcaagcgctatctcgcgaaagccttg
cagcgctgctatttcgccgacttgtcttttctcgactga
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integrated database retrieval system