Pandoraea sputorum: NA29_22835
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Entry
NA29_22835 CDS
T03554
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pspu
Pandoraea sputorum
Pathway
pspu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NA29_22835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspu03019
]
NA29_22835
Enzymes [BR:
pspu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NA29_22835
Messenger RNA biogenesis [BR:
pspu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NA29_22835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJC18087
UniProt:
A0A239SP58
LinkDB
All DBs
Position
4255575..4257023
Genome browser
AA seq
482 aa
AA seq
DB search
MSFDSLGLIDPLLRNLQDLNYETPTPVQAKAIPAVLAGKDVMAAAQTGTGKTAGFALPLL
QRLVQLGPQVASNRARVLVLVPTRELAEQVLQSFVAYGKGLGLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFTDDIRTMAANILREPVDISVSPRNATASKIKQWVIPVDKRNKPDLFMHLVA
ENDWKHALVFVKTRNGVDYLAGVLDEAGYSVDTIHGDKPQPARLRALERFKTGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIQQTLRREEEPGFEAEHRVPETSATGQIIKKPKKPKKPKVQSLPQGELGKQPASGKKA
APQHGEKKRKPATQRPASTGNSPKPASGNPFSGQKARSKPAKDSVANLLRPAGKTASGRG
KR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactcgctgggtctgatcgatccgttgctgcgcaatttgcaggatctcaac
tacgagacaccgacgccggtgcaggcgaaggcgattcctgccgtcctcgcgggcaaggac
gtcatggcggccgcgcagaccggtacgggcaagacggcgggtttcgcactgccgctgttg
cagcgtctcgtgcaactcggaccgcaagtggccagcaaccgggcgcgcgtgctggtgctg
gtgcccacgcgcgaactggcggaacaagtgctgcaaagcttcgtcgcgtacggcaagggg
cttggcttgcgatttcttgcagcctacggcggcgtgagtatcaatccgcaaatgatgaaa
ctgcgcaagggcgtggatgtgctggtggcaacaccgggtcgtctgctggaccttaatcgt
cagaacgccgtgcagttcgatcaggtgcagacactggtgctcgacgaagccgatcgcatg
ttggatctcggcttcgcacgcgaactcaacgcggtattcgcggcgctcccggcccagcgt
cagacactgttgttctccgcgacgtttaccgacgacattcgcacaatggccgcgaacatt
ctgcgcgagccggtcgatatcagcgtgagtccgcgcaacgccacggccagcaagatcaag
cagtgggtcatcccggtagacaagcgtaacaagccggatctcttcatgcatctggtcgcc
gagaatgactggaaacatgcactggtgttcgtgaagacgcgcaatggcgtggactatctg
gcgggcgttctggacgaagcgggctattcggtcgacaccatccacggcgacaagccgcag
ccagcacgactgcgtgcgctggagcgcttcaagacaggggaagtgcagatgctggtggcg
accgacgtcgccgcgcgcgggctggacatcgacgacctgccgctcgtcatcaacgtcgat
ctgccgatcgtggcgcaggactacgtgcaccgaatcggccgcaccggtcgcgcgggggcg
agcggcgtggccgtatcgctcgtgtgcgccgacgaagcgccacaactggccgccatcgaa
gcactgatccagcaaacactgcgtcgcgaggaagaacccggcttcgaagccgagcaccgt
gtgccggagaccagcgcgacggggcaaatcatcaagaagccgaaaaagccgaagaagccg
aaggtgcagagccttccgcaaggcgagctcggcaagcaacccgcgtccggcaagaaggcg
gcgccgcaacacggcgagaagaagcgcaaacccgcgacacaacgcccggcgtcgacgggc
aacagcccgaagcccgccagcggcaacccgttcagcggacaaaaggcacgcagcaaaccg
gcaaaagactccgtcgcgaatttgcttaggcccgccggtaaaacggcaagtggtcgcggc
aaacgttga
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