Paraburkholderia sprentiae: BJG93_15725
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Entry
BJG93_15725 CDS
T04610
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pspw
Paraburkholderia sprentiae
Pathway
pspw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJG93_15725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspw03019
]
BJG93_15725
Enzymes [BR:
pspw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJG93_15725
Messenger RNA biogenesis [BR:
pspw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJG93_15725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
HI1480
P-loop_SecA
AAA_22
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
APA86682
UniProt:
A0A1I9YK49
LinkDB
All DBs
Position
1:2991299..2992885
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AA seq
528 aa
AA seq
DB search
MSFDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLNSTPPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID
ALKRGMDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPK
RQNLLFSATFSDEIKALADGLLDSPALIEVARRNTTAETVAQKIHPVDRDRKREMLTHLI
RQHNWFQVLVFTRTKHGANRLAEQLTKDGITALAIHGNKSQSARTRALAEFKDGTLQVLV
ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDI
EKLIKRPIPQEVIAGFEPDPTAKPEPILRRGQGGGGGGGRSPRQGQGAGRREGASAGGAG
GGGSAKPAQGSGQRTAQGTGQRSSNAQPAPRPQGAKPAGNGGQTRRDTQRHDDRPRAAGQ
DGGAAQHAPRKPQGNGSPNANPGALLGGTKRNDAPRRAQPSRNGERGR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaaccgttggtccgcgctgtcaatgaactgggc
tacaccagcccgactccgatccagactcaggcgatcccggccgtgctcaacggcggcgat
ctgctcgccggcgcgcaaaccggcaccggcaagactgccggcttcacgctgccgatcctg
cagcgcctcaattcgacgccgccggccgccggcggcaagcgcgtggtacgcgcgctgatc
ctcacgccgacgcgtgaactggccgcgcaggtcgaagaaagcgtgcgcgcctatggcaag
tatctgaagctgaaatcgaccgtgatgtttggcggcgtcggcatcaatccgcaaatcgat
gcgctcaagcgcggcatggatatcgtcgtcgcgacgccgggccgcctgctcgatcacatg
cagcagaagaccatcgacctgtcgcatctcgagatcctcgtgctcgacgaagcggaccgc
atgctcgacatgggcttcatccatgacatcaagcgtgtgctcgcgaagctgccgccgaag
cgccagaacctgctgttctcggcgacgttctccgacgaaatcaaggccctcgccgacggc
ctgctcgactcgccggcgctgatcgaagtcgcgcgccgcaatacgacggccgaaacggtc
gcgcagaagattcacccggtcgatcgcgaccgcaagcgcgagatgctcacgcatctgatc
cgtcagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaaccgc
ctcgccgagcaactgacgaaggacggcatcaccgcgctcgcgattcacggcaacaagagc
cagtcggcacgcacgcgtgcgctcgccgagttcaaggatggcacgctgcaggtgctggtc
gcgacggacatcgccgcacgcggcatcgatatcgatcagctgccgcacgtggtcaacttt
gatttgccgaacgtgccggaagactacgtgcaccgcatcggccgcaccggtcgcgcgggt
gcgacgggcgaagcggtgtcgctcgtgtgcgtcgatgaactgcagttgctgaaagacatc
gagaagctgatcaagcgtccgattccgcaggaagtgatcgccggtttcgagccggacccg
accgccaagcccgagccgatcctccgacgcggccagggcggtggtggcggcggcggccgc
tcgccgcgccagggacaaggtgcagggcgccgcgagggcgcgagtgcgggcggtgccggt
ggtggcggatcggctaagccggcccaaggctccggtcagcgtaccgcgcaaggcacgggt
cagcgttcgtcgaacgctcagcccgcgccacggccgcaaggcgcaaagccggccggcaac
ggtggacagacgcgccgcgatacgcagcgtcatgacgatcgtccgcgtgcggcagggcaa
gacggcggtgccgcgcaacatgcgccgcgcaagccgcagggcaatggttcccctaacgcc
aatccgggcgcattgctcggcggcacaaagcgcaacgatgcgccgcgtcgtgcgcaaccg
tcgcgcaacggcgagcgcggccgctaa
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