Punctularia strigosozonata: PUNSTDRAFT_104944
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Entry
PUNSTDRAFT_104944 CDS
T03131
Name
(RefSeq) polyadenylate binding protein
KO
K13126
polyadenylate-binding protein
Organism
psq
Punctularia strigosozonata
Pathway
psq03015
mRNA surveillance pathway
psq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PUNSTDRAFT_104944
09123 Folding, sorting and degradation
03018 RNA degradation
PUNSTDRAFT_104944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_104944
03041 Spliceosome [BR:
psq03041
]
PUNSTDRAFT_104944
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PUNSTDRAFT_104944
mRNA cycle factors
Stress granule specific factors
PUNSTDRAFT_104944
Spliceosome [BR:
psq03041
]
Complex C
Other components
Complex C specific factors
PUNSTDRAFT_104944
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_DEAH11
RRM_occluded
RBD_RDR6
RRM_3
YflT
RRM_fung
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
18875912
NCBI-ProteinID:
XP_007385598
JGI:
104944
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MSAAAPPVAPAQDAPAASPEVAPAPAQAPAPAPAPAPYIAPGPQNHVPAPSASLYVGELD
PTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQLNYSLIKG
RACRIMWSQRDPALRKTGQGNIFIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRSK
GYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKKQFTNVYVKNI
DPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKG
RKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFG
AITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSLAQRREVRRQQ
LESQIAQRNQIRMQQAAAAGMPAGYMNPPMYYPGPGFPPPAGRGFGYGQPGMMPPRPRYA
PGQQVPGMPVPAPYGYGVPGYPRGAPRGPPPARGPGGPGGSPTQTNAPPMPRAQPSAPPA
NGAPRAPAPNGAAPPRAPAAQRPPQGRAPAQPAAGAAAPAPQDNGISSVLANASPMEQKQ
MIGEMLYMRIAPAQPDLAGKITGMLLEMENAELIHLLDNDDALQSKVGEAIAVLHEYTQK
EGDAPAAA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgccgctcctcccgtcgcacccgcgcaggacgcgcccgccgcctcgcccgag
gtcgcccctgcgcctgctcaggccccagctcctgctccggccccggcgccgtacatcgcg
cctggcccgcagaaccacgttccagccccgtcggcctcgctttacgtgggcgagctcgac
ccgaccgtgtcggaggccatgctgttcgagatcttcaatatgattggccctgttgcaagc
attcgtgtgtgtcgtgacgcggtcactcgtcgctcgctcggctacgcctacgtcaactac
ttcaatgctgctgatggcgagcgtgcccttgagcagctcaactactcgctcattaaaggt
cgtgcgtgccgcatcatgtggtcccagcgcgaccccgccttgcgcaagaccggccagggc
aacatcttcatcaagaaccttgatgatgctatcgacaacaaggccctgcacgataccttc
gctgcgttcggcaatgtgctctcgtgcaaggtcgcgacggatgaaatgggccgctccaag
ggttacggcttcgtccattacgagaccaacgaggcggctgagagcgctatcaaggccgtc
aacggcatgttgctcaacgacaagaaggtttacgtcggtcaccacgtttctaagaaggac
cgtcaagccaagcttgatgagcagaagaagcagtttaccaacgtctacgtcaagaacatt
gaccccgaggccaacgatgacgagttccgcgagctcttcaccccgttcggcaacgtcacc
tctgccgttctccagagggatgaggagggcaggagccgcggctttggcttcgtgaacttc
gagacccatgaggaggctcagaaggctgtggacactctccacgactccgacttcaaggga
aggaagctcttcgtctcccgcgctcagaagaagtctgagcgcgaggaggaacttcgccgc
tcgtacgagcaggcgaagatggagaagatgagcaaataccagggcgtcaacctttacatc
aagaacctcgaggacgacgtggatgacgagaagctccgtgacgccttcgagcccttcggc
gcgatcaccagcgccaaggttatgcgcaccgagggcggtacctccaagggcttcggtttc
gtgtgcttctcttcccccgacgaggcgaccaaggccgtcgccgagatgaacaacaagatg
atgggctccaagccgctctacgtgtcgctcgcccagcgtcgcgaggtgcgcaggcagcag
ctcgagagccagatcgcccagcgcaaccagatcaggatgcagcaggccgctgccgctggc
atgcccgccggctacatgaaccccccgatgtactaccccggccccggcttccctcctcca
gctggccgtggctttggctacggtcaaccgggcatgatgccccctcgtccccgctacgca
cctggtcagcaggtgcccggcatgcctgtccctgctccttacggctacggcgtgcctggc
tacccccgtggtgctccccgcgggcccccgcctgctcgcggccctggcggtccgggtggc
tcccccacgcagaccaacgctccgccgatgccccgtgcccagccgagtgcaccccctgct
aacggtgccccccgcgcccccgcgcccaacggcgctgctcctccccgcgcacccgctgct
cagcgcccgcctcaaggccgggcccctgctcagcccgccgctggcgccgctgctcccgcg
cctcaggacaacggaatctcgtctgtgctcgcgaacgcttcgcccatggagcagaagcag
atgatcggtgagatgctctacatgaggatcgcgcccgcccagccggaccttgccggcaag
atcacgggcatgttgctcgagatggagaacgccgagctcatccacttgctcgacaacgac
gatgctctccagagcaaggtcggcgaggccatcgccgtcctgcacgaatacacccagaag
gagggtgatgcgcccgcggccgcttga
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integrated database retrieval system
