Punctularia strigosozonata: PUNSTDRAFT_105254
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Entry
PUNSTDRAFT_105254 CDS
T03131
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PUNSTDRAFT_105254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psq03041
]
PUNSTDRAFT_105254
Enzymes [BR:
psq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PUNSTDRAFT_105254
Spliceosome [BR:
psq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
PUNSTDRAFT_105254
Complex C
U5 SnRNP specific factors
PUNSTDRAFT_105254
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
IATP
Motif
Other DBs
NCBI-GeneID:
18875935
NCBI-ProteinID:
XP_007385774
JGI:
105254
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MATRGQPLSIESLLEKQKAEKEAAAKPKFLSKEERAKLAIAKRAQEIKEEKEREEQARRQ
REALEREAEELRRRERDREYGSRYGSGNGGRYEDRDRDRDRDRHGRDRDDRYGRRDDRRD
SRRPPPPPPAAQDERKYQGVPTGPRADRSGKPSDSSAPSSSTHSPVPGGSNGNGNEEYTP
SMTESEISAIRSRYLGVDKKKRKIRKMNDRKFVFDWDEGDDTLSASGPQPLELQNRAGVM
FGRGHLAGMDDGGGTGAGAGTNGKVDASADALERRRAAKGAADERHWSEKKLEEMRERDW
RIFREDFSIAARGGQIPHPLRSWEESDIPAQILEIVDSIGYKEPSPIQRQAIPIGLQNRD
VIGIAETGSGKTAAFVIPMLAFISKLPAFTEENRHLGPYALIMAPTRELAQQIESEARKF
ATPLGYKCVSIVGGRAVEEQQFNLREGAEIIIATPGRLKDVLERHVLVLSQCRYVVMDEA
DRMVNLGFEADLLFILDKLPSEAMAGEESTTAMEVDEEGGTNVVVTKGRTRVTTLFSATM
PPPVERIAKKYLRKPAVVTIGEAGRAVDTVEQRVEFVSGDEKKKQKMLEILNSNQYAPPI
IVFVNQKKTADMVAKDLQRAGWSAATLHSGKNQEQREAALQSLRDGHADILVATDLAGRG
IDVPDVTLVINYQMANTIEAYVHRIGRTGRAGKQGTAITFLTNEDAEVMYDLKQEISKSP
VSKMPVELARHEAAQHKVTREMKRKRDAEDED
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgagaggacaaccgctttctatcgagagcttgctagaaaagcagaaggcggag
aaagaagctgcggcaaagccaaaattcctatcgaaagaggaacgtgccaaactcgcgata
gccaaacgtgcccaggagattaaggaagaaaaggaaagggaggagcaggcgcgacggcag
cgcgaagcactcgagcgtgaggcggaggagctgcgcaggcgggaaagagacagggagtat
ggatcgaggtatggcagcgggaacggtgggcgatacgaggaccgtgatcgcgaccgcgac
cgcgaccgccacggccgggacagagacgacaggtatggccggcgtgatgatcgacgagat
agcagacgcccacctccacctccacctgcagctcaggatgagcgcaaatatcaaggtgta
cctacggggcctcgtgccgaccgaagcggcaagccatctgactcctctgcaccgtcctct
tctacccactccccggtccctggtggctcgaatggcaatggcaacgaagaatatacgcct
tccatgacggaatccgaaattagcgctatacggtcgcgttacctcggcgtcgacaagaag
aagcggaagattcgcaagatgaacgaccgcaaattcgttttcgactgggatgagggcgac
gacaccttgtcggcttctggtccgcaacccctagagctgcagaatcgtgctggggtcatg
tttgggaggggacaccttgccggtatggacgacggcggagggacgggcgccggggcgggc
acaaacggcaaggtggatgcgagtgcggatgcgctggagaggaggagggcggcgaaaggc
gcggcggacgagaggcattggtcagagaagaagctggaggagatgagagagcgtgattgg
cgtatcttccgggaggacttcagcatcgccgcgagaggtggtcaaatcccgcacccgctc
cggtcatgggaggaatcagatataccagctcaaatactggaaatcgtcgattcgatcggt
tacaaggaaccgtcacctatccaacggcaggctattcctattggtctgcagaaccgcgat
gttattggcattgctgagactggctccggaaagaccgcggcgtttgttatccctatgctc
gcattcatatccaagctacctgcattcaccgaagaaaaccggcatctgggtccttatgcg
ttgattatggcgccgacgcgcgagttggcgcaacagatcgagtcggaggcccgcaaattt
gccacaccactcgggtacaaatgtgtctcgattgtcggaggtcgtgcagtcgaagagcaa
cagttcaacctccgggaaggagcagaaatcatcatcgccacgcccggtcgtctgaaggac
gttcttgaacgccatgttctcgtcctttcccaatgccgctacgtcgtcatggacgaagcc
gaccgcatggtgaacctgggtttcgaagccgacctcttattcatcctcgacaaactgccc
tccgaagccatggccggcgaggagtccacgaccgcgatggaggtcgatgaagagggcggg
accaacgttgttgtgacgaagggtaggactcgggtaacgacgttattcagtgccacgatg
ccgccgcctgtcgagcgaatcgcgaagaaatacctcaggaagcccgcggtggtgacgatt
ggtgaggccggtagagccgtggatacggttgagcagcgggtcgaatttgtcagcggagac
gaaaagaagaagcagaagatgctggagattctcaacagcaaccagtatgcgccaccgatc
atcgtattcgtcaaccagaagaagacggcggacatggtggcgaaagacctccaacgcgct
ggctggagcgcggcaaccctacattccggcaagaaccaagaacagcgagaggcggcgctg
caatcactacgtgacggtcacgccgacatcctagtcgccacggacttggctggtcgtggt
atcgacgtgcccgatgtcacgctcgtcatcaactaccagatggccaacactatcgaagca
tacgttcatcgtattggtcgtactggacgtgcgggcaagcaaggcacggcgatcacgttc
ctgaccaatgaggatgccgaggttatgtacgatcttaagcaagagatctcgaagagtcct
gtgagtaaaatgcctgtcgagctcgcgaggcacgaggcggcgcaacacaaggtaacgagg
gagatgaagaggaaacgggacgcggaggacgaggattga
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