Punctularia strigosozonata: PUNSTDRAFT_116668
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Entry
PUNSTDRAFT_116668 CDS
T03131
Name
(RefSeq) cleavage and polyadenylation specific factor 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
psq
Punctularia strigosozonata
Pathway
psq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PUNSTDRAFT_116668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_116668
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
PUNSTDRAFT_116668
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
18876830
NCBI-ProteinID:
XP_007388695
JGI:
116668
UniProt:
R7S322
LinkDB
All DBs
Position
Unknown
AA seq
204 aa
AA seq
DB search
MSNTIALYPLSNFTFSTKEAQPEEDPSVAARLQRLQNNYEDWGMRRTVEGILVVHDHGHP
HILMLQIANAFFKLPGDYLKPGEDEIEGLKRRLDDRLAPPTNSSQFNASHGVDNEWEIGD
CLAQWWRPNFETFMYPFIPAHITKPKECKKLFLVQMPERKVLAVPKNMKLLAIPLFELYD
NAARYGPQLSAIPHLLSRYNFIYQ
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatactattgcactctacccgctttccaacttcacgttcagtaccaaagaggcg
caacccgaagaagacccatcagtggccgcacgactgcaacgcttgcagaacaactatgag
gattggggtatgcgccggacggttgagggcattcttgtcgtgcacgatcatggacacccg
catatcctcatgctgcagattgcgaacgcgtttttcaagctgcctggcgactatctcaaa
cccggtgaagacgagatcgaaggactgaagcgtcggctagacgaccgccttgcgcctccg
acgaactcaagccagttcaacgcttcgcacggcgtggacaacgaatgggagattggcgac
tgcctcgcgcaatggtggaggccgaactttgaaacgtttatgtacccttttattccggcg
catatcaccaagccgaaggagtgcaagaagctattcctcgtccagatgcccgaaagaaag
gtcctcgcggtcccgaagaatatgaagcttcttgccattcctctgttcgagctttacgac
aatgcggcaagatacggtcctcagttgtctgccatccctcacctgctctctcggtataac
ttcatttaccagtaa
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