Punctularia strigosozonata: PUNSTDRAFT_117746
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Entry
PUNSTDRAFT_117746 CDS
T03131
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
psq
Punctularia strigosozonata
Pathway
psq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUNSTDRAFT_117746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_117746
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PUNSTDRAFT_117746
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PUNSTDRAFT_117746
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
Motif
Other DBs
NCBI-GeneID:
18876947
NCBI-ProteinID:
XP_007379092
JGI:
117746
LinkDB
All DBs
Position
Unknown
AA seq
186 aa
AA seq
DB search
MASEIVLPGQPLALPRGPVPQLGTGIYLRGGQVRASLIGEPRYQGSTLAIHTVRPHPPAP
NSVVLGSVTRLSPLQANVAITVVDGVPLPAGEEFTGIIRVQDVRATEKDKVKIADCFRGG
DVVKGVVISLGDARSYYITTARNDLGVIFATSEAGATMEPVSWQEMRCPKTGRTEKRKCA
KPETLQ
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgagatcgttctgcctggacagcccttggccttgccgagaggaccagtgcct
caactcgggacgggcatctacctgcggggtggccaagtgcgcgcgagtttgatcggtgaa
ccaagataccaaggatccacgcttgcgatccacaccgtacggccgcatcctccagctccg
aactccgtcgtgctcgggtcagtcactcgactgtcgcccctgcaagcaaacgtagcaata
accgtggtcgacggcgtgcccctgcccgctggggaggaattcaccggtatcatacgcgta
caagatgtgcgcgccaccgaaaaggataaagtgaagattgcggattgcttcagaggtggc
gacgtcgtgaaaggcgtcgtgatttctctgggggatgctcgtagctactacatcacaaca
gcccgcaacgatctgggcgtcatcttcgctaccagcgaagctggcgccacgatggaaccc
gtgagctggcaagaaatgcgatgtcccaaaaccgggcgcacggaaaagcggaagtgcgcg
aagccggagaccctgcaatag
DBGET
integrated database retrieval system