Punctularia strigosozonata: PUNSTDRAFT_118913
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Entry
PUNSTDRAFT_118913 CDS
T03131
Name
(RefSeq) superkiller protein 3 SKI3
KO
K12600
superkiller protein 3
Organism
psq
Punctularia strigosozonata
Pathway
psq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUNSTDRAFT_118913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_118913
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
PUNSTDRAFT_118913
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_16
TPR_19
TPR_CcmH_CycH
TPR_2
TPR_1
TPR_14
TPR_8
TPR_12
TPR_17
TPR_11
TPR_9
TPR_22
ANAPC3
TPR_6
ARM_TT21_5th
ARM_TT21_N
PknG_TPR
TPR_20
Motif
Other DBs
NCBI-GeneID:
18877092
NCBI-ProteinID:
XP_007381102
JGI:
118913
LinkDB
All DBs
Position
Unknown
AA seq
1431 aa
AA seq
DB search
MSTFAKPKLKAAREAIGKKDWTKARDTSAEVLEYEPDNYHAHVFLGLSCFELGEYQQSEQ
YSRKAIELNRDQPLAWQGLVKLYERTERWDDLHDTVQALADLWAKSKDAVKCAENLQKLV
DLRRDHGSSQDVVTALSNFLPDSPYYDTLSLLPPPDPTNPTGTTTFFAQSAIHNSLPILE
EIVELSERAEENSIEKEIEKRRTRLGASSAQQLRLEVGREYWSISKLPRLYTDIINHPNT
SDELRRATESKLLRHKQRYLFALPSSGDAASTKSQLAEEVQDLVNGAVLLEIPDELAWEL
YIASKDVDTLEAYDFALFRRFMCIFPSSDLTKLLQGFFAYAQIPPREEGDDEAVDEQPPE
EDPYDTILDAFTSLNESVLAHRILCEVYTLGADHENAIRASESGLELVGKTEQSWGKKFP
QTRKAFRIALATALVHFYPPKHHARALGILDDVLAQDPDNVPCLMGRGYVMQYAGNWEAA
GSLFERVTEVEDEHPEHGLRAREEHAWCRMHLGDASRAAEALQVVLDSLDHLQEHGQDQA
RCWWRLGQCIWHARDGDKDVAYRHFITALKRSSTFAPAFTSLGIYYSEYASPPDPTRASK
CFQKAFELDARESDAAHRLAQGFAEEREWDLVEVVARRTIAGEGGLGGGIDVEEGAAAAR
HLPTNVWAWKAVGIVELTRRNYPAAIQALQTALRAHQQDHTSWLRLGDAYYRAGRYAAAS
KALARAKELCPDDWMCSFFIGEVQRQTGFFREAVDSFESVLEDRPEELGVLMALAQTYLD
RGLLESSSGFISRAEESCLSAIKAAQRAIECGSGFRHLQLKIIGDALYHLSSRPAFTNEQ
VVRPVVNSVHSLVGDDVSERISGFVASNPLKAALSVCGVELLESALFVYDHRLDLGFHDD
ASAASAWCDQAVACYKWGMVSQAEEQRNLALKRATASMTEAVKADPGNDTYWNLLACMSL
RERPKFAQNAYIRALEIDNKNPVTWTHLGLLYLYHGDAELANEALYRAQTLDPDYTLAWV
GQGLVATANGHDTDARALFEHINNSLTPTVVAADLEYASRTFELLSRPLHGRARSTEEFV
PVFFALDRYCKRRPEDASALHLFGLVCERIGHIELAVELVTRSIEILEGIYEDTEDATVE
RQFVIANTTLGRMRVATGNFPGALESFETAQALVPLDSDDRSIKILRCQCDFGRALAYFN
LGHHDDALASFQTALQISGGDREIKGHVSVLLSQALWALGSTEFQETAKNHLLQSIAEDP
EDLTAINTLAGMGIVSEDSSLVDAALSELLSMSLDKRQQLDPGREVPYLLLQHHLGQNDV
MGAISLAQAAVVAEPTRPELKRNLSVLTLQQGDYSAALALLPQSETETADESRKSTPLRA
VAVTLAGEDNAEARRLAQKAVMLSPADKRSWEVLALHCQLHQPGNGHGFSS
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgttcgcaaaacctaagctgaaggcagctagagaagccatcggcaagaaggat
tggaccaaagcccgtgacacgagtgctgaggttctcgaatatgagccggataactaccac
gcacatgtgttcttagggctttcctgctttgagctaggcgaataccaacaaagcgagcaa
tactccaggaaggctatcgagttgaatcgtgatcaaccactagcctggcagggattagtg
aagttgtacgagcggactgagagatgggacgaccttcatgatacggtgcaggcattggcg
gatctttgggctaagtcaaaggatgcggtcaagtgcgctgaaaatctccaaaaattggtg
gatctccgacgtgaccacggaagtagccaagatgttgtcactgcactgtccaacttcctt
ccggattccccatactacgacacactttcattactgcctccccccgatccaacgaatccg
acagggacgacaacgttcttcgcgcaatccgcaatccacaattcccttccgatattggaa
gagatcgtagagctgtctgagcgggcggaggaaaactcgatcgagaaagagatcgagaag
cggagaactcgacttggcgcctccagtgctcagcagctacgcctcgaggttggccgggaa
tattggtctatctctaagttacctagactatacaccgacataatcaaccaccccaatacc
agcgacgaactgcgtcgggctacggaatcgaagcttttgcggcataagcaacgctatctg
tttgctctgccttcgtcgggtgacgcggcatctacgaaatcacagctcgctgaggaagtg
caagatcttgtgaatggtgctgtattgctcgaaatcccggacgagctcgcatgggagctc
tatatcgcaagcaaagacgtcgataccctcgaggcatatgattttgcactgttccgtcgc
ttcatgtgtatcttcccttcctcagacttgaccaagctgctccaaggtttcttcgcatat
gcacagatacctccgagggaagaaggcgatgatgaagcagttgatgaacagcctccagaa
gaagacccatatgatactatcctcgacgcattcacttcattgaacgaatcggtgcttgct
catcggatcctttgcgaggtttatacgctcggggccgatcatgagaatgctatccgggct
agcgagtcaggactggagcttgtgggaaagacggaacagagctgggggaagaagtttccg
caaacgagaaaggcgttccgtatcgctttagctacagcgctcgtacacttctatccgccg
aagcaccacgcgcgtgcattagggatactggatgatgtgttggcccaagaccctgacaac
gtcccatgcctcatgggtagagggtacgtcatgcaatatgccggaaactgggaagccgca
ggctcgcttttcgagcgagtcacggaggtagaagatgagcatccggaacatgggcttcgt
gctcgggaggaacacgcatggtgccgaatgcacctcggcgatgcttccagggccgcagag
gcgttgcaagttgtgctcgatagcctcgatcaccttcaggaacacggtcaggaccaggct
cggtgttggtggaggcttgggcagtgtatctggcacgcccgcgatggagacaaagacgtt
gcctatcgccacttcatcaccgcccttaaacgttcatccacgttcgcacccgcgttcaca
tctttgggaatatactactctgagtatgcttcccctcctgatccgaccagagcctccaaa
tgcttccagaaggcgttcgagctggacgctcgtgagagtgatgcagcgcataggctcgcg
caagggttcgccgaagaaagggagtgggatcttgtggaggttgtggcaaggagaacaatt
gcgggagaaggaggtctcgggggaggaatcgacgtggaggagggggccgccgctgctcgc
caccttcccaccaacgtatgggcgtggaaggccgttggtattgtcgagctaactagacga
aactacccagccgccatacaagcactgcaaacggctcttcgtgcccatcaacaggaccac
acatcctggctccggctcggagatgcctattaccgagctggtcgttatgctgctgcttcg
aaagcactcgctcgcgcaaaagaattgtgccctgatgactggatgtgctccttcttcatc
ggcgaggttcaaaggcaaacagggttcttccgggaagctgtagactcgttcgagtcagtc
ttggaggataggcctgaggaattgggcgtcctgatggcactggcacagacatacctagat
cgaggattactagaaagctcgtcgggcttcatctcacgagcagaagaatcttgcctcagt
gcaatcaaggcagcgcagcgggcgatcgagtgcggatcagggttccgtcatctgcagctc
aagatcatcggagacgccttgtaccacctttcctcgcgaccagcgttcaccaatgaacag
gtcgtgcggcctgttgtcaattctgtccattcactggtcggcgatgacgtcagcgaacgg
atctccgggttcgtcgcatccaacccgctgaaagcggctcttagcgtctgtggcgtagaa
ctactagaaagtgcgctcttcgtatatgaccaccgcctagatcttggatttcacgacgac
gcatctgcggcaagcgcttggtgcgaccaggccgttgcctgctacaaatggggaatggtg
tcccaggcagaggaacaacggaatctcgccttgaagagagcaacggcaagtatgactgaa
gcggtcaaagccgatcccggaaatgacacctattggaacctgcttgcctgcatgtcactt
cgagaaaggcccaagttcgcacaaaatgcatatatccgagccttagagatcgataacaag
aatccggttacttggacgcatcttggcttgctgtatctctatcatggtgacgcggaactt
gccaacgaggctttgtatagagcgcaaactcttgatcctgattacacactcgcttgggtg
ggccaagggctggtggcgaccgcgaacggccacgatactgatgccagggccctcttcgag
cacatcaacaacagcttgaccccgacggttgtggcggcagatcttgaatacgcatcacgg
accttcgagctgctgtctaggcccttacacgggcgtgcaagatcaacggaagagttcgtg
ccagtgtttttcgccctagatcgttattgtaagcggcgcccagaagatgcctctgccctc
catttgtttgggcttgtatgcgagcgtatcggtcacatcgagctggccgtagagctggta
acacgttcgatcgagattctggaaggcatttacgaggacacggaagacgccaccgtcgag
cgacagttcgtgattgcaaacaccactctcggaagaatgagggtggccacgggcaacttt
ccgggtgcactagaatctttcgagaccgcccaggcactcgttccgctggattctgatgac
cgctccataaaaattctccggtgtcaatgcgacttcggccgcgcgcttgcatattttaat
cttggtcaccacgatgatgcactcgcaagcttccagacggcattacagatttctgggggg
gaccgcgagattaaaggacacgttagcgtactgctctctcaggccctgtgggcattgggc
agtacggagttccaggaaacggcgaagaatcatctgcttcagagcattgctgaggaccca
gaagatttaaccgctatcaacacgctcgccggtatgggcatcgtttccgaggacagcagc
ctcgtcgacgctgctctatcggaactactctcaatgtccctggataagcggcagcaactg
gaccccggacgggaggtgccgtaccttctgcttcaacaccatctcggtcagaatgatgtg
atgggtgcaatatctctcgcgcaagctgcggtcgttgcggaaccgacacggccagaattg
aagcgcaacctttcagtgttgaccctgcaacaaggcgattacagcgcagcactggctctg
cttccgcaatctgaaacggaaacagcagacgagtcacgtaagtcaacgccgcttcgagcc
gtcgccgtgacactggccggtgaagacaacgcggaagctcgaaggctggcccagaaggcg
gtgatgttgagtccggcggacaagcgaagttgggaagtcctggctctgcattgccagctg
caccagcctggaaacgggcatggattctcgtcctga
DBGET
integrated database retrieval system
