Punctularia strigosozonata: PUNSTDRAFT_119725
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Entry
PUNSTDRAFT_119725 CDS
T03131
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PUNSTDRAFT_119725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psq03021
]
PUNSTDRAFT_119725
Enzymes [BR:
psq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PUNSTDRAFT_119725
Transcription machinery [BR:
psq03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
PUNSTDRAFT_119725
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
18877187
NCBI-ProteinID:
XP_007382378
JGI:
119725
LinkDB
All DBs
Position
Unknown
AA seq
1723 aa
AA seq
DB search
MNIAHSIPSVVQSVSFSFLTAEDIRRISVKQIINPILLDDLNRPNIGGLYDPALGPSEKQ
DICTTCRLNYFTCPGHYGHIELPSPVFHPLFMTNMYHVLRTTCLFCHKFKVGPTTLCVYA
GKLRLAEHGLLVAAKSLDDLIPQKKNKGSAQADGDEDEDGVIESSEDFAKRVNVYVDLQL
ARASSSKRDDYKDGLVYQARKDLIQEFIRISQLKKCMNCGAHGYTFRKEGHTKIIEYDLT
RKQKEQNIASGRRRPDVLHSVYHSSNAHLKETTGDDSDVSMSDAEPAGDPTMSDEDQEMA
SVEDENLHQIPTGPAKAANGTIKGKRGRNERVMAPEECRAHLRRLFSNEPKMCSLIFGRH
GPFSKFRPDGHATASADIFFMDAIPVSPTRFRPPAKMGDTLFEHAQNQLLTRVLNTSYKL
RDLTRDLRAASVKSVQYDEATRRRILGALLDALVQLQVDVNSFLDSSKNPQPVRQGQLPP
AGVKQGLEKKEGLFRQHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPESVTP
ANVHEMRQLVINGARAYPGATMVEFEDGHQQSLDVMSVEARTALANQLLKPPEGERNSSK
HGLYTRTTAANKKVYRHLRDGDVLILNRQPTLHKPSMMVHKARVLRGEKTIRMHYANCNS
YNADFDGDEMNIHFPQNQVARAEAMMIANTDNQYLVTTSGKPLRGLIQDHVVAGVWMTSK
EAFFTREEYFQLLYGALRPEEEGGHITGRLVTLPPTIWKPNALWTGKQIISTVLLNITPS
NARGLNTEFKAKVPGYLWGKDSIEEDKVVFVDGELLCGVLDKSSFGASEYGMVHSVYELY
SSEVAGRLLGILSRLFTKFLQHRAFTCRMDDLTLTPTGDAKRRDILQNGRNLGTEAAMEN
FPSLVQVPPVDKPGALESLLREVLRDDSKMAGLDVTVKTKLATLTKAIADAVMPRGLSRQ
FPLNHMQTMTLSGAKGSAVNAQQISCALGQQELEGRRVPVMISGKTLPSFKAFETKAIAG
GYVASRFLTGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLKVHYDYTVR
GSDDSIYQFHYGGDALDVTKQKYLYQFDFTSRNELSLINKYQPGRINRIVNDSDALEYSK
KIIRKSAPKRHKYAPILSKFNPSLYLGATSERFAESVESYLKFNPHGLLKSRTTENAVEL
RRRHPLLTKDRFRLLMNVQYMRALVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAAN
VTLGIPRLREIVMTASKQPKTPSMIVPIRPDVGDRELETFCKQANRLSLSQVIDEITVTE
KLVTNGKARRKEFNIRLAFFPREEYEREYHVSPPEILAAFGARFALILKKEILTEMKRLD
ADLKGLMAALGKGKAVKDTTGADAADNDDDVDEGARGGNRGEDERSEIGDGDAEDAKHER
QRKEQSSYESDGGDDDLDDDVDYGAKGIAEAYANVDKEMEAEELTDAQPVVLQAKKLVNQ
SSAVQDEFKRTLKFAKSLKFDDSGCSLELEFEEDMPKLLLVGVVERTCAKTIVREIPGIT
ECFKGTDAKKRAQITTNGSNFRGVWEFSALSEVSIIDHDGIYSNDIYGFLMTYGVEAARS
AILREISGVFDAYKIDVDGRHLELIADYMTFDGGYKPFNRKGISTHSSPLMKASYETTAA
FLSDATLYGDFDTLTSPSGNIVLGKPSTTGTGSFDVIMPVTVS
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgcgcactccatcccgtccgtcgtgcagagcgtctccttctcattcctcacc
gccgaagacatccgacgtatctctgtcaagcagatcatcaaccccatcctccttgatgac
ttgaaccgaccaaacatagggggactatatgaccccgcgcttggaccaagcgaaaagcag
gacatatgtactacttgtcggctgaactacttcacttgccctggccattatggtcatatt
gagcttccttctcccgtctttcatcccttgttcatgacgaacatgtaccatgttctccga
acgacatgcctcttctgtcataaattcaaagtcggtcccaccacgctctgtgtatatgcg
ggaaagcttcggctcgctgaacatggcctgttggtagcggcgaaaagcctcgacgatctt
attcctcagaagaaaaacaagggtagcgcccaggcggacggggacgaagacgaagatggg
gttatcgaatcaagcgaagacttcgcgaaacgtgtaaatgtgtatgtcgatctccaactt
gcgcgagcctccagtagcaagagagacgactacaaggatggactagtatatcaagctcgc
aaggacctcatccaagaattcatccgcatatcgcagctcaaaaagtgtatgaattgtggc
gcgcacggatataccttccgcaaagaaggacatactaaaatcatcgagtacgacctcact
cgtaaacaaaaggaacagaatatcgcatcgggaaggcgccgaccagatgtcctccattcc
gtctaccattcctccaacgcacacttgaaggagacgactggagacgactccgacgtgtct
atgtctgatgcagagcctgcgggcgaccccacgatgtccgacgaagaccaggagatggcc
agcgttgaagacgagaacctgcaccagattccgacaggacctgccaaagcagccaatggg
accatcaaaggcaaacgtgggcgcaacgagcgagttatggcgccagaggagtgccgtgct
catctacgccggctgttcagcaatgaaccaaagatgtgctcgctgatctttggacggcac
ggaccattctcgaaattccgaccggatgggcatgccactgcgtctgcggatattttcttc
atggatgctatccctgtctcgccaactcgtttccgcccaccagcgaagatgggagacacc
ctattcgaacatgcacagaatcagctgctgacgcgggttctcaacacgtcatacaagcta
cgggatttgactagagacttgcgtgctgcatctgtgaagagcgttcaatacgatgaagcg
actaggcggaggatactcggcgcgttgttagacgccttggtgcaacttcaagtagacgtc
aatagcttccttgatagtagcaagaatccgcagcctgtacgacaagggcaattacctccc
gccggtgtcaagcaaggcctcgagaagaaggagggcttatttcgacagcatatgatgggc
aagcgtgtaaattatgctgcacgatctgttatttctccggatgtcaacatcgagccgaac
gagataggaatcccacccgtgttcgctcggaagttgacatttcctgagtcggtcacccca
gcgaatgtgcacgaaatgcgtcaactcgttatcaatggtgcgagggcataccctggtgct
acgatggtcgagttcgaggatggacatcagcaatcgcttgatgtaatgtccgtcgaagca
cggactgctctcgcgaaccaactgttgaaacccccagaaggcgagcgcaacagctccaag
catggtctatatactcgaaccacagctgcaaacaagaaggtttaccggcatttgcgagac
ggagacgtgctgattctgaaccgccaaccaacgctgcataaaccgagtatgatggtgcac
aaggccagggttctgcgaggcgagaagaccatacgaatgcactacgcgaattgcaattcg
tacaatgccgatttcgatggcgacgaaatgaacattcatttcccccaaaatcaggttgct
cgtgcggaggccatgatgattgccaacacagacaatcaatatttagtgactacatcaggt
aaacccttgcgcggtctcatccaagatcatgttgttgccggtgtgtggatgacgtccaag
gaagcgtttttcacgcgggaggagtacttccaacttctctacggtgctctccgtccagaa
gaggagggcgggcatatcaccggccgtttggtgactctgccacccacgatatggaaacct
aacgcgctgtggacaggcaaacagatcatttcgacggtgctcctgaacatcacgccgagt
aatgcacgtggactcaacacagaattcaaagccaaagtaccggggtatctttggggcaag
gattcgatagaggaggacaaggtcgtcttcgtagatggcgaattactttgcggcgttctg
gacaagtcttccttcggcgcaagcgaatacggcatggtccactccgtctacgaactttac
agctctgaagtcgccggacggctactcggtatcctcagtagactgttcacgaagttcttg
cagcaccgggcattcacctgtcgaatggacgatctgacgctcactcctaccggtgacgcc
aagcgcagggatatcctccagaatgggcgcaatcttgggacggaggccgctatggagaat
ttcccctcgctcgtgcaggttcctcccgtggacaagcccggtgctctggaaagtctactc
agggaagtcctgcgagacgatagtaaaatggctggccttgatgtcacggtcaagacgaag
ttggccaccctcacaaaagcgattgcggatgcggttatgcctcgcgggctatctcgccaa
ttccctctcaaccatatgcaaacgatgaccttatcaggagccaagggtagtgccgtgaat
gcgcagcaaatttcgtgtgcgctgggtcagcaagagctcgaaggccgtcgcgttccggtg
atgatcagcgggaagacgctaccttctttcaaagcttttgaaaccaaggccatcgccggt
ggttacgttgctagtcgtttcttgaccggcatcaaaccccaggagttctatttccattgc
atggcaggtcgggagggtttgatcgatacagcagtcaagacatcgcggtctggttatttg
caaagatgcctgatcaagcatttggaaggcctaaaggtccactacgactacaccgttcgc
ggtagtgacgactccatctaccagtttcactatggtggtgacgctcttgatgtcacgaaa
caaaagtatctctaccaattcgacttcacatcgcggaacgagctctccctcattaataag
tatcaacctggccgaattaaccgtatcgtcaacgacagtgacgctttggaatactccaag
aagattattagaaagtctgctccgaagcgtcacaagtatgcgcctatcttgagcaaattc
aacccttctctatatcttggtgcgacctcggagcgattcgctgagagcgtcgagagctat
ctcaagttcaatcctcacggcctactcaaatcaaggacgacggagaatgccgttgaactc
agacgccgtcaccccctgctcactaaggatcggttccgtttgctcatgaacgtgcaatac
atgcgcgccctcgtcgatcccggagaagccgtcggtttattggcatctcaaggagtcggc
gagccgtccacccaaatgacgctaaatacgttccacttcgccggccacggagcagccaac
gttacacttggtattccccgcctccgagagatcgtcatgacggcgtccaagcaaccgaag
acaccatccatgatagtgccaatccggccagacgttggggatcgcgaactcgaaaccttc
tgcaagcaggccaaccgtctatcgctatctcaagtcatcgatgaaatcaccgtcacggaa
aagctcgtcacgaatgggaaggctcgacggaaagaattcaatattcgtctggctttcttc
ccccgggaagagtacgagcgtgaataccatgtctcaccaccagagattctagcggcgttc
ggcgctcgctttgctctgatactgaagaaagaaattttgaccgagatgaagcggcttgac
gcagacttgaagggtttgatggcggcgctcggcaaaggaaaagccgtcaaagacaccacc
ggagcggacgctgctgataatgatgacgatgttgatgagggagccaggggaggcaatagg
ggcgaagacgaacgcagtgagattggagacggagacgccgaggatgccaaacatgaacgg
cagaggaaggagcaatcctcttacgaatccgatgggggcgacgacgacctcgatgacgac
gtggactatggggctaaggggatcgcggaagcttatgcgaatgtcgacaaggagatggag
gcagaagagttaacggatgctcagcctgtggtattacaggcgaagaagctcgtgaaccag
tctagcgctgttcaggacgaattcaagcgtactctgaagttcgcaaaatccctgaagttt
gatgacagtggatgttcgctcgaactagagtttgaagaggatatgccgaagcttctactt
gtcggtgttgttgaacgcacgtgtgcaaaaacgattgtacgggaaattccggggataaca
gaatgtttcaaggggacggatgcaaaaaagagagcacaaatcacgactaacggctctaat
ttccgaggagtatgggagttctctgccttgtccgaggtgtcgatcatcgatcatgacgga
atatattcgaatgatatatacggattcttgatgacttacggcgtcgaggctgcccgatct
gccatattaagagaaatatcaggggtcttcgatgcctataagatcgacgtcgatgggcgt
cacctggaattgatcgctgactacatgacgtttgatggcggatataagcctttcaaccgc
aaaggcatatcgacacacagttcgccgctaatgaaggcatcttacgagaccactgctgcc
tttctctcggatgccaccctgtatggagatttcgatactttgacatccccgtcaggcaat
atcgtccttggcaagccgagcacaaccggaacagggtcattcgatgttattatgcctgtc
accgtatcataa
DBGET
integrated database retrieval system
