Punctularia strigosozonata: PUNSTDRAFT_120738
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Entry
PUNSTDRAFT_120738 CDS
T03131
Name
(RefSeq) RNA-binding domain-containing protein
KO
K12881
THO complex subunit 4
Organism
psq
Punctularia strigosozonata
Pathway
psq03013
Nucleocytoplasmic transport
psq03015
mRNA surveillance pathway
psq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PUNSTDRAFT_120738
09122 Translation
03013 Nucleocytoplasmic transport
PUNSTDRAFT_120738
03015 mRNA surveillance pathway
PUNSTDRAFT_120738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_120738
03041 Spliceosome [BR:
psq03041
]
PUNSTDRAFT_120738
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PUNSTDRAFT_120738
TREX complex
PUNSTDRAFT_120738
Spliceosome [BR:
psq03041
]
Complex C
Other components
EJC/TREX
PUNSTDRAFT_120738
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PUNSTDRAFT_120738
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_11
Motif
Other DBs
NCBI-GeneID:
18877306
NCBI-ProteinID:
XP_007384297
JGI:
120738
LinkDB
All DBs
Position
Unknown
AA seq
238 aa
AA seq
DB search
MATRQDRSRKPYGRPDEDRPTAEDGSWLHDKAPGTNRQRRRSPVSAPANAAPNSRLVVSG
LHYEVTAKDLINAFGHMGTLVREPLIKYDRSGRSTGVAIVTYETADEAALAKAKFDGVRI
NDKPMRVSFDTAPPKSQRSVSAPTSLLNRIEKPPLIDRLADDKASAAIEKPSRTAGSGPV
RTRGGRGRGGAAPRTPRESKKPKTAEELDKELESFMGDTSAPVQPSVASADADVEMAS
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atggccactagacaggatcgttctcgcaaaccgtatggtcgacctgatgaagaccggcct
accgcggaggatggatcctggctacacgacaaagctcccggaaccaaccgccaacgaaga
aggtctccagtgagtgcgccagcaaacgccgccccgaactcgaggcttgtggtgtccggc
ttgcactacgaagtgacggcgaaagatctcatcaatgctttcggccacatgggaacgctc
gtgcgcgagccattgatcaagtacgaccgcagcggacgctcgacgggagtcgccatcgtc
acgtacgaaaccgccgatgaagccgccttggcaaaggccaagtttgacggcgtcagaatc
aacgacaaaccgatgagggtctccttcgacacagcacctcccaaatctcaacgttcagtc
agcgcgcctacgtcgctcctcaacaggatcgaaaaaccgcctttgatcgaccgtctggca
gacgataaagctagtgccgccattgagaaaccctcgaggactgcgggatcggggccagtt
cggactaggggcgggagaggtcgcggaggcgctgctccgcgcaccccccgcgaaagcaag
aagcccaagacggcggaagagctcgacaaggagctggaatcgtttatgggcgatacgagc
gccccggtgcagccttcggtggccagcgctgatgcggacgtcgaaatggcgtcttaa
DBGET
integrated database retrieval system
