KEGG   Punctularia strigosozonata: PUNSTDRAFT_122009
Entry
PUNSTDRAFT_122009 CDS       T03131                                 
Name
(RefSeq) hypothetical protein
  KO
K06100  symplekin
Organism
psq  Punctularia strigosozonata
Pathway
psq03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:psq00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PUNSTDRAFT_122009
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psq03021]
    PUNSTDRAFT_122009
   03019 Messenger RNA biogenesis [BR:psq03019]
    PUNSTDRAFT_122009
Transcription machinery [BR:psq03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PUNSTDRAFT_122009
Messenger RNA biogenesis [BR:psq03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     PUNSTDRAFT_122009
    U7-dependent histone pre-mRNA processing factors
     PUNSTDRAFT_122009
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N TPR_Slam
Other DBs
NCBI-GeneID: 18877473
NCBI-ProteinID: XP_007386568
JGI: 122009
LinkDB
Position
Unknown
AA seq 1182 aa
MAAPVDPLQALQAALAVPADSKEQADLLAALREALEAQPAPIPILCGTLVKTVAGAGDSL
LKRWVLDLLQYAICRSALSLEARTQLAGQSLDTLVGLLRDPNPSTVKIVVQCFATVYPLL
FRVLCTSNMSMRPQWDMLAQAKATILEWVWAPTVTAGVKLAAIKFLQRVIIVQTRGVSDP
RLQNKNDPNIAMCPTNHPFIPVQQLEQEGLKLIESVITILYTSQNHDILSAILNSWATLP
KLRPSLAQLVVSSLASWTPAALAGLPASEVKSAEKAVRILLVHLSKTPQAQPYIQQINEA
LAAQGVRMDRAASEEKARRAALAAEAARLKRPMEASPTPPTASSSGTHAEPDAKRVKREH
GAAGSAANANFLASFDFSSLPASLVTDLIVANLQAFSEERLAELVRAYRVANGAPVPALA
EAPAPARAPSVEPVPGLSGTAPEAEAPKARPDGSAKVDRTEVKEKEGDREVAVKEEVVNP
LDMNVDGEEIEYEPERLNQELSGDEAAMAMETEATEEALGADGELKIQLLTDFRLPPPPE
VPETERDAVVRASMMRLWDEVDADGAPEENLAVPELWMTLVVRMVTRVAYPPKGDGGGGE
EEKEEKGMEVDGGDEVGYARQERLRRTLCDYIMADFPRRVRLATVWMNEEWYNDQIRTRG
DRSWRPNYDTWLNQIVSAYQTQLDAKDRTFSRFLLDIPSVPMDVFALLRDLCVDPERREV
GFTALRGFVMQRPSLRDDAITVLLDLTTHPEKLTRAAAINTVRRWVPDQQPMDGMVRDFA
LQMLRRLQSTKKGASSGGGGEDTAMDDEDGELPPEELVQTPYLGEQIEIPAVKAEVLQHV
ELLFALSRQVPEFLDEIFAAYSQMHQSVQETVQDLITPLIRSLGSGHGKLLTLLRTFPPG
AESLALRVLNIFTEHGRPSAPLVVLVKSLMAERDLDARFLMPIIGEMDKADIHRHLPRIV
SMLNGTPENKALVRAVFSSIVTTPPQTFTTVTSNLPRVRQSELLTPAELMVVLHNSEKEI
GLKSAMEAIGICFSMTDVYRSEILAVVLQQIVDEPVLPTLFLRTVIQAVQTYKSLVGFVS
TTLLSRLITKKIWTNPPLWAGFIRCAKVIAPASFGALLQLPKDQLRDLVDKQPDLKAGLR
EFVLKKAGNKARTAGYLDLFGEDEPGAPKEPGGSKEGTPTPS
NT seq 3549 nt   +upstreamnt  +downstreamnt
atggcagccccggtcgaccccctgcaggccctgcaagccgcgctcgccgttcccgccgac
tcgaaggagcaggccgacctgctcgccgccctgcgtgaagcgctcgaggcgcagcccgcg
ccgatccccatcctctgtggcacgctagtgaagaccgtcgcgggagcgggcgactccttg
ttgaagagatgggtgctggacttgctgcagtacgcgatatgtcggagcgcattgagtttg
gaggcaaggacgcagttagccgggcagagcttggacacgctcgttggtctgttgcgcgac
cccaatccgagcaccgtcaagatcgtggtgcaatgcttcgctacggtgtatccactgcta
tttcgcgtcctatgtacgagcaatatgagcatgcgccctcagtgggatatgctcgcgcaa
gccaaagccaccatcctcgagtgggtctgggcgccgaccgtcacagcgggagtcaagctg
gccgcgatcaaattcctccaacgagtgatcatcgtgcaaactaggggcgtgtcggatcct
cgactacaaaacaagaacgacccgaacatcgccatgtgtcccaccaaccatcccttcatc
cccgtccaacaactcgagcaagaaggactcaagctcatcgagagcgtcatcaccatcctc
tacacctcacagaaccacgacatcctctctgccatcctcaactcctgggcgacactcccg
aagctgcgaccgtctctggcgcaactcgtcgtctcttcccttgcgtcatggacgcccgcc
gcccttgccggcctccccgccagcgaggtcaagagcgccgaaaaggccgtgcgcatcctg
ctcgtccacctatccaaaacgccgcaggcccaaccgtacatccagcagatcaacgaagcg
ctcgctgctcaaggcgttcgcatggaccgcgctgcatccgaagaaaaagctcgcagagcc
gcgctcgcagccgaagccgcccgcctcaagcggcccatggaggcgtcccctactcctccc
accgcatcctcttccgggactcacgcggagccggacgcgaagcgggtgaagcgcgagcac
ggcgcggcgggcagcgcggcgaacgcgaatttcctcgcctccttcgatttctcgtcattg
cctgcgtcgctcgttacggacctcatagtcgcgaacctgcaggcgttcagcgaggagcgg
cttgcggagctcgttagggcgtatcgggtcgcgaacggggcaccggtgccggcgctcgcg
gaggcccccgcacctgcgcgggcaccttcggtcgagcctgtacccgggctttcggggact
gcgccagaggcggaagccccgaaggcacgaccggatgggtcggcgaaggtggatagaacg
gaggttaaggagaaggagggagatcgggaggtggcggttaaggaggaagtggtgaatccc
ctggacatgaatgtggacggagaagagatagagtatgagcccgagaggctgaaccaagag
ctatcgggcgatgaggcggcgatggcgatggagacagaggcgacagaggaggcgttgggt
gcggatggggagctgaagatccagctgttgacggactttaggctcccgccgccgccggag
gtgccggagacggagcgcgacgcggtcgtgcgcgcgagcatgatgcggctgtgggacgaa
gtggacgcagacggcgcgccggaggagaaccttgctgtgcccgagctgtggatgacactc
gtggtgcggatggtcacgcgcgtcgcttatccgccgaagggggatggagggggcggggag
gaagagaaggaggagaaggggatggaggtggatgggggagacgaggtcgggtacgcaagg
caggagaggctgaggcggaccttgtgtgattatatcatggcggatttcccccgacgggta
cggctagcgacggtgtggatgaacgaagagtggtacaacgaccagatacgaacacgaggt
gaccgaagttggcggccgaactacgacacctggttgaaccagattgtatcggcgtaccag
acgcaactcgacgccaaggaccgaacgttttctcggttcctgctcgacataccctcggtt
ccgatggatgtgtttgcgctgttgcgagatttgtgtgtcgatcccgagaggcgtgaggtg
ggctttacggctctgcgggggtttgtgatgcaacggccatcgctgagggacgatgcgata
acggtgttactagatctgacaacacatccagaaaagctcacgcgagcagccgcgatcaat
accgtccggcgatgggtgcccgaccagcagccgatggatggtatggtacgcgactttgcg
ctccagatgctccggaggctgcagtcgaccaaaaagggcgcatcttccggaggtggaggc
gaggacacagcaatggacgacgaggatggcgagctcccaccggaggagctggtgcagacg
ccgtacttgggagagcagatcgagatcccggcggtgaaggcggaggttctgcagcacgtc
gagctgttgttcgcactgtcgagacaggtaccggagtttcttgacgaaatattcgctgca
tacagccagatgcatcagtccgtgcaggagacggtacaagatttaatcacgcccttaata
cggtcgctggggtcagggcacggcaagctcctcacgcttttgcggacattcccgcccggc
gccgagtctctcgcgctgcgggtgctcaatatcttcacggaacacggacggccgagtgca
ccgcttgtggttctcgtgaagagtctcatggcggagagggacctggacgcacggttcttg
atgcccatcattggggagatggacaaggcggacatccaccgacatctaccccgcatcgtc
tcgatgttgaacggcacgccagagaacaaggctcttgtgcgcgccgtgttcagctcgatt
gtcaccacgccgccgcaaacgttcacgaccgtgacctcgaacctgccacgcgtgcgccag
agcgagttactgacgcctgcggagttgatggtcgtgctgcacaactcggagaaggagatt
gggttgaagagcgcgatggaggcgatcggaatctgcttctcgatgacggacgtgtaccga
tccgagatactcgccgtcgtgctgcagcagatcgtcgacgagccggtgctgccgacgctc
ttcctccggacggtgatccaggccgtgcagacgtacaaatcgctcgtcggcttcgtgtcc
accacgctgctctcgcgcctgatcacgaagaagatctggacgaacccgccactctgggcg
ggcttcatccgatgcgcgaaggtgatcgcgcccgcgagctttggcgcgctgctgcagctg
ccgaaagaccagctgcgagacttggtggacaagcagccggatttgaaagcggggttgagg
gagttcgtactcaagaaggcggggaacaaggcgcgtacggcggggtacctcgatctgttt
ggggaggacgagccaggcgcgccgaaggagccgggagggtcgaaggagggtactccgacg
ccaagttga

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