KEGG   Punctularia strigosozonata: PUNSTDRAFT_127489
Entry
PUNSTDRAFT_127489 CDS       T03131                                 
Name
(RefSeq) U4/U6 snRNP-specific spliceosomal protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
psq  Punctularia strigosozonata
Pathway
psq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PUNSTDRAFT_127489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:psq03041]
    PUNSTDRAFT_127489
Spliceosome [BR:psq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    PUNSTDRAFT_127489
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_DCAF4 WDR90_beta-prop_4th PRP4 Beta-prop_WDR41 Beta-prop_Aladin NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_SCAP Nbas_N Beta-prop_HPS5 RMC1_N WD40_like Beta-prop_EIPR1 eIF2A WD40_RFWD3 Beta-prop_WDR75_2nd WD_LRWD1
Other DBs
NCBI-GeneID: 18878046
NCBI-ProteinID: XP_007386466
JGI: 127489
LinkDB
Position
Unknown
AA seq 520 aa
MAELTLDNLMDDGNYLGSERARMENQVILDELERKKKARSMAVPTDDNRVKARLREIGEP
ITLFGERAADRRDRLIYVLSQINAARGDDAIGADEELTEESDEEEQEEFYSPGSFELLEA
RRKIAEFSLPRAQKRIAQQRVDSRIPLGRVIDIRKKVFAEVKRFAIMGSQIGDDRPISQV
RFSPDSKILAASSWSGSVKLWNVPACTPIRTLVGHTDRVGGVAWHPRATLSQSESAANLV
SGAGDMSVHLWSLQSDQPLAIMKGHQDRVCRVAFHPSGDYVASASFDTTWRLWDVATSKE
LLLQEGHSKEVYAVDFQDDGALVASGGLDAIGRVWDLRTGRTAMVLDGHIQGIFGISFSP
NGYQVATGAGDDTIRIWDMRSLKALYTIPAHKSNVSDVRFFRSDLPLPTMTFAPGSQTGA
PMDTPAMQATSGAPTSDERPPPKSANAEQEWKYRSGLYLASAGYDGFVRIWSADDWQLLR
TLSTDNSKVMSVDFASDAQLLASGTYNRNFQLFSMEDTVL
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggcggaacttacgctagataatcttatggacgatggcaactacttgggctcagagcga
gcgcgcatggagaaccaggtcatactcgatgagcttgagcgcaagaagaaagctcgtagc
atggccgtccctaccgacgacaaccgcgtcaaggcgcgtcttcgcgagataggggagcct
atcacgctttttggagagcgtgccgcagaccgcagagatcgtcttatatatgtcttgtcg
caaatcaatgcagctcggggagatgacgcgataggtgcggatgaagagttaacggaggag
agtgacgaagaggagcaagaggagttctactctcctgggtcttttgaactactcgaggca
agaagaaagattgccgagttctcactcccgagagctcaaaaacgtatagcacaacagcga
gtcgacagcagaataccgctcggtagagtcattgacattcggaagaaggtcttcgcggaa
gtcaagagattcgccatcatgggttcccaaattggagacgatcgaccaatatctcaggtt
agattctcccctgatagcaaaatactagccgcttctagctggtcggggtctgtcaaactt
tggaatgtgccagcgtgtacgcctatacggacactagtgggtcataccgatcgtgttggc
ggagtagcatggcatcctagagcaactctgtcgcagagtgaaagtgctgccaaccttgtg
agcggtgccggtgatatgagcgtccatctgtggtcactgcaaagcgatcaacccttggct
atcatgaaaggccaccaagatcgggtatgccgcgttgcatttcatccgtcaggggattac
gtggcatcggccagtttcgacactacgtggcggttgtgggacgttgctacctcaaaagag
cttctgctccaggaaggtcactccaaagaggtgtacgcggtcgacttccaggatgatggc
gccctagtcgcttctggaggtttggatgccatcggtcgcgtctgggacttgcgaactggc
cggaccgccatggtgttggacggccatatacagggcatctttggcatatcgttctctccg
aatggctaccaggttgctactggcgccggcgacgacacaatccgtatatgggacatgcgc
tcgctgaaggcgctttataccatccctgcgcataaatcgaacgtttccgacgtgcgattc
ttccgtagcgacttaccactccccaccatgactttcgcgccgggatctcaaactggtgct
ccgatggacactcctgctatgcaggcgacgagcggcgccccaacctccgacgaacgccct
cccccaaagtctgcaaatgcagagcaagaatggaagtatcggtcaggtctctaccttgcc
agtgctggatacgacggatttgtgcgcatctggagcgcggatgattggcagctgctgcgc
accttatccacagacaacagcaaagtcatgtctgttgacttcgccagcgatgcacaacta
ttggcatccggaacctataataggaatttccagctattctcaatggaagacactgtgtta
tga

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