Punctularia strigosozonata: PUNSTDRAFT_140113
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Entry
PUNSTDRAFT_140113 CDS
T03131
Name
(RefSeq) histone deacetylase complex catalytic component RPD3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03082
ATP-dependent chromatin remodeling
psq03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PUNSTDRAFT_140113
03083 Polycomb repressive complex
PUNSTDRAFT_140113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psq03036
]
PUNSTDRAFT_140113
Enzymes [BR:
psq01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
PUNSTDRAFT_140113
Chromosome and associated proteins [BR:
psq03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
PUNSTDRAFT_140113
HDAC complexes
Sin3A-HDAC complex
PUNSTDRAFT_140113
BRAF-HDAC complex
PUNSTDRAFT_140113
REST complex
PUNSTDRAFT_140113
SHIP complex
PUNSTDRAFT_140113
MiDAC complex
PUNSTDRAFT_140113
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
PUNSTDRAFT_140113
Heterochromatin formation proteins
Other heterochromatin formation proteins
PUNSTDRAFT_140113
Chromatin remodeling factors
NuRD complex
PUNSTDRAFT_140113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
NIL
Motif
Other DBs
NCBI-GeneID:
18880509
NCBI-ProteinID:
XP_007378530
JGI:
140113
LinkDB
All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MTESAPAPASEKWLSVDNEKKRVCYFFDSDIGGFHYGPGHPMKPTRIRMCHSLVMNYGLY
KKMEIFRAKPATKREMTQFHTDEYIDFLGRITPSNMNAYIKEQHKYNVGDDCPVFDGMFD
YCSISAGGSMEGAARLSRDKCDIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLRYHS
RVLYIDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGDIRDIGIGKGKHYALNFPL
RDGITDESYKSVFEPVIRQVMESYDPAAIVLQCGTDSLSGDKLGCFNLSMRGHANCVKFV
KSFNKPLLLLGGGGYTMRNVSRAWAFETGLAAGVELGPNIPVNEYYDYFGPTYELDVKPS
NMEDLNTRRYLDRVKGMVFENLRAIGGPPSVQMQDIPRVPIDDHMDDIRADDDLISPDER
RPQRLLDYRRQPEGELSDSDDEGEGGRRDRTSHREGNGEVHAQPAGRPPTGIMRTGSTGG
AGPSAHGQGVVLTTLPATSEEVEETKPEPMEVDVEAAIAPAT
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatctgcaccagcccccgcgtccgaaaaatggctttccgtcgataacgagaag
aagcgggtgtgttatttcttcgattctgatattgggggctttcattatggccctggacac
ccgatgaaaccaactcgaatacgcatgtgccactcactggtcatgaactacggcctgtac
aagaaaatggagatctttcgcgccaagccagcaaccaagcgtgaaatgacccagtttcac
actgacgagtacatcgacttcttgggccggataactcctagtaatatgaacgcatatatc
aaggagcagcataaatacaatgtgggcgacgactgtcccgtcttcgacgggatgttcgac
tactgttcgatatctgctggtggttcaatggagggagcagcgcgactgagccgcgataaa
tgtgacattgctgtcaattgggcaggcggcctccatcacgcgaagaaaagcgaagctagc
ggtttttgctacgtcaacgatattgtgcttggcatcttggaactactcaggtatcacagc
agggtactttacattgacatcgatgttcatcatggcgacggagtggaagaagcattctat
accactgaccgtgtgatgacctgctcattccacaagtatggggaattcttccccggaacc
ggtgacatacgggatataggaatcggcaagggaaaacattatgcgctgaacttcccgttg
cgagatggtatcactgatgaaagttacaagagcgtattcgaaccggtcattcgacaggta
atggagtcttacgatcctgccgcgatcgtgttgcaatgcggtacggattcactctcagga
gacaaactcggttgcttcaacctctcgatgagagggcacgccaactgcgtgaaatttgtc
aagtcattcaacaaaccactgctgcttctcggcggtggcggctacaccatgcgcaacgta
agccgagcatgggcgttcgaaacagggctggcagcaggcgtagagctcggccctaatata
ccggtcaacgagtactacgactacttcggacctacctatgaacttgacgtgaaaccctct
aatatggaagacctgaatacgcgaaggtatcttgaccgtgtgaagggcatggttttcgag
aacttgcgcgcaatcggtggtccaccgagcgtccaaatgcaagacataccgagagtccct
atagacgaccacatggacgatatacgggctgatgacgacttgatttcaccggacgagcgc
cggccgcagagattactcgattaccgacgacaacctgaaggggaactttcggactcagat
gacgaaggagaaggaggtagaagggaccgtacttctcatcgcgaaggcaatggagaagtc
cacgcccagcctgcagggcgtccacctactgggatcatgaggactggatctactggcggc
gccggtccgagcgctcatggtcagggcgtcgtcctgacgacgttaccagccacgtcagaa
gaggttgaggagactaaacctgaacctatggaggtcgatgtggaagctgcgatcgccccc
gcgacgtga
DBGET
integrated database retrieval system
