Punctularia strigosozonata: PUNSTDRAFT_143009
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Entry
PUNSTDRAFT_143009 CDS
T03131
Name
(RefSeq) DEAD-domain-containing protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
psq
Punctularia strigosozonata
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_143009
03041 Spliceosome [BR:
psq03041
]
PUNSTDRAFT_143009
03036 Chromosome and associated proteins [BR:
psq03036
]
PUNSTDRAFT_143009
Enzymes [BR:
psq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PUNSTDRAFT_143009
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PUNSTDRAFT_143009
mRNA cycle factors
Common to processing body (P body) and stress granule
PUNSTDRAFT_143009
Spliceosome [BR:
psq03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
PUNSTDRAFT_143009
Chromosome and associated proteins [BR:
psq03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
PUNSTDRAFT_143009
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-GeneID:
18880992
NCBI-ProteinID:
XP_007382720
JGI:
143009
LinkDB
All DBs
Position
Unknown
AA seq
639 aa
AA seq
DB search
MSNGTTGLEAQFSGLGIKSAYVPPHLRSQQRAASSPTLPSPANTDGANGWNDSRSSTPSS
GYGGGRGGGRGGFSSGYSRGGGWGDRGSGGGRSDYGGGSRGGGGESFGYGSWKDGKHVVG
GRNARMEKELYGEPDDPSKQHTGINFEKYEDIPIEATGAGVPEPVNEFTSPPLDPVLLEN
IAYARYTRPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPILSSSFTNGPRAPPVEE
SNGYGYGRARKAYPTALILAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADINQQLRTI
ERGCDLLSATPGRLVDLIERGRISLANVKYLVLDEADRMLDMGFEPQIRRIVQGEDMPGV
QDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQRIEFVEDHDKRSMLLD
ILTAQEKQGLTLVFVETKRMADMLSDFLYQSQFPATSIHGDRTQREREMALQTFRTGRTP
ILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGVATAFFNYGNKNIV
KDLMELLREANQDIPPWLETVARESSFGGSSRGGRGRGGGGGRGRGGGAARDFRSSSYAG
GSRAGGFGGAPQYGGSGYGGGAGYGNGGYSGGGGDRGWW
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatggcacgaccggtctcgaggcccagtttagcggtctcggcataaaatcagcc
tacgttcctcctcacttgaggagccagcagcgggctgcttcttctcctacccttccctct
ccagcaaataccgatggcgccaacggctggaacgactctcgttcttctactccctccagc
gggtatggcggaggacgtggcggcggccgaggaggcttctccagcggctatagtcgcggc
ggaggatggggtgaccgaggctccggcggtggtcggtcagactacggaggcggatctcgt
ggcggaggcggcgaatccttcgggtacggttcttggaaggatggtaaacatgtcgtcggt
ggacgtaacgcgcgcatggagaaagagctctacggcgagcccgacgacccatccaagcag
cacaccggcatcaacttcgagaagtacgaggacatcccaatcgaagccaccggcgccggt
gtccctgagcccgtcaacgaattcacaagcccgcccctcgaccctgttctccttgagaac
atcgcatacgcgcgctacactcgccccacacctgttcagaagtactcagtgcccatcgtt
gcagctggcagagacttgatggcttgtgctcagactggctccggcaaaaccggcggtttc
ctgttccccatcctgtcgtcttcgttcaccaacggtcctcgcgctcccccggtggaggag
tcgaacggctacggctacggccgtgcgcgcaaagcttatcccaccgcgctcatcctcgct
cccacccgcgagctggttagccagatccacgaggaagcacgcaagttcgcctaccgttcg
tgggtacgcccggccgtcgtttacggcggtgccgacatcaatcagcagctccgcactatc
gagcgtggctgtgatttgctcagcgccacccccggccgtcttgtcgatcttattgagcgc
ggtcgtatcagcctggccaacgtcaagtatcttgtccttgacgaagctgaccggatgttg
gacatgggtttcgagcctcagatccgccgtatcgtgcaaggcgaggacatgcctggcgtt
caggatcgccagactctcatgttcagcgccactttcccacgcgatatccaaatgctcgcc
cgcgacttcctgaaggactacatcttcctttctgtcggtcgcgtcggttcgacctcagag
aacatcacgcagaggatcgaattcgtggaggaccacgacaagcgctccatgctgctcgac
atcctcacggcgcaggaaaagcagggcttgactctcgtgttcgtggagacgaagcgcatg
gccgacatgttgtcggatttcctatatcagagccagttccctgcaacgtctattcatggc
gaccgaacccagcgtgagcgtgagatggctctccagactttccgcaccggacgtaccccc
attcttgtcgccactgctgtcgcggcccgtggtctcgacattcccaacgtcacgcatgtt
atcaactatgatttgcccactgacatcgacgactacgtccaccgcatcggtcgtaccggt
cgtgctgggaacaccggtgtcgcaacggcctttttcaactacggcaacaaaaatatcgtc
aaggacctaatggagttgcttcgtgaagctaaccaggacattccgccctggctggagacc
gttgcccgcgaatcctcgttcggcggcagttcccgcggcgggcgtggtcgcggaggagga
ggaggacgtggccgcggcggaggcgctgccagggatttccgctcctcgagctacgccggc
ggaagccgtgctggcggttttggtggcgctccccagtacggcggcagcggctacggaggc
ggggctggatacggtaacggcggttactccggcggcggaggcgaccgcggctggtggtaa
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integrated database retrieval system
