Punctularia strigosozonata: PUNSTDRAFT_48856
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Entry
PUNSTDRAFT_48856 CDS
T03131
Name
(RefSeq) DNA-dependent RNA polymerase II second largest subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03020
RNA polymerase
psq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PUNSTDRAFT_48856
09124 Replication and repair
03420 Nucleotide excision repair
PUNSTDRAFT_48856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psq03021
]
PUNSTDRAFT_48856
03400 DNA repair and recombination proteins [BR:
psq03400
]
PUNSTDRAFT_48856
Enzymes [BR:
psq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PUNSTDRAFT_48856
Transcription machinery [BR:
psq03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PUNSTDRAFT_48856
DNA repair and recombination proteins [BR:
psq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PUNSTDRAFT_48856
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
DUF3013
MRNIP
Motif
Other DBs
NCBI-GeneID:
18883052
NCBI-ProteinID:
XP_007378905
JGI:
48856
LinkDB
All DBs
Position
Unknown
AA seq
1247 aa
AA seq
DB search
MSQDFQGAYSQEGIAYDDPNYAYDEDADEEEITQEDCWTVISSFFDQKGLVRQQLDSFDE
FVQNTMQELVDENSDLILDQADQHTGSATDMTRRYEIKFGQIYLSRPTVTEADGSVMPVF
PQEARLRNLTYNAPLYIEMRKRTLIGREDPEGAPGDVIWQEEPGDAAEDSRKVWIGKVPI
MLRSTFCILHDIPENDLFDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPS
PISFLAEIRSAVEKGGKTISQFQVKMYTRNQERSLGNLIKATIPYIKVDIPIWVVFRALG
VISDRDILEHICYDMQDAQMLEMLKPCIQDGFAIQDREIALDFIGNRGTTTGLSKERRLR
YAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAG
PLLANLFRMLFRKLTKDVYRYLQKCIETGKQFNLSLAVKHNTITNGLKYSLATGNWGDQK
KSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEG
QACGLVKNLSLMATISVGSISAPVIEFLEEWGLESLEENAHSSTPCTKVFVNGVWMGVHR
DPLNLVKTIKKLRRKDDISPETSVVRDIRERELRISTDAGRVCRPLFIVENQQLVLKKSH
IEKLHKHNTEPVLDDAGAPTFDENGKQRFFQYQFDELVKEGVIEYLDAEEEETVMICMTP
EDLENARLKQQGHDPSQDDPDFDPAARIKTGTQAHLWTHCEIHPSMILGICASIIPFPDH
NQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQ
NAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSYMDMEKKSGIQQLEEFEKPTRDT
TLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTRRDVSTPL
KSTEQGTVDQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPF
TAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDATPFTDLTVESVSQFLRQ
RGYQSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEG
RSRDGGLRFGEMERDCMISHGIAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFEC
RACKNKTECSQLYIPYAAKLLFQELQSMNIAARLYTTSTGRIRDVRD
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagacttccagggtgcctattcgcaagagggcattgcctacgacgatccgaac
tatgcgtatgacgaggatgcggacgaagaggagatcacgcaggaggattgctggacggtc
atctcgtctttctttgaccagaagggtctcgtccggcagcaactcgactccttcgatgaa
ttcgtacagaataccatgcaggagctcgtcgacgagaattccgacttgatcctcgaccaa
gctgatcagcatacgggctctgcaacggacatgacgcgtcgctacgagatcaagtttggg
cagatttacctgtctcggccgactgtgacggaggcggatggctcggtcatgcctgtgttt
cctcaagaagctcgcctgcgcaacttaacgtacaacgccccgctgtatattgagatgagg
aagagaactctcattgggcgggaggatccagaaggcgcgcctggagatgtaatatggcaa
gaggagcccggtgatgcagcggaggattctaggaaagtgtggataggaaaggtccctatc
atgttacggtcaacgttctgtatccttcacgacatcccagaaaacgaccttttcgatttg
aacgaatgcccatacgattccggcggatatttcatcatcaacggctccgaaaaggtcctc
attgcgcaagagcgtatggccacgaaccatgtctatgttttcgctaaggcccaaccatca
ccaataagcttcctagcggagattcgtagcgctgtggaaaagggtgggaagactattagt
caattccaggtcaaaatgtatactcggaaccaggagcgatcacttggtaacctcatcaaa
gcaactataccctatatcaaggtcgacatcccgatttgggtcgtcttccgagctttgggt
gtcatatccgatcgcgacattctggaacatatctgctacgacatgcaagatgctcaaatg
ctcgaaatgctcaagccgtgtatccaggatggctttgcaatccaggatcgggagattgcc
ttggatttcataggcaatcgtggcactaccaccggcttgtctaaggaacgccgattacgg
tatgcgcaggagatactgcaaaaggaaatgttgccacacgtttccatggcggaggggtct
gagtcgaaaaaggcgtacttcttcggctatatgattcacagactattactggcggccctt
gagcgccgtgagctggacgatcgagaccacttcggaaagaagcggttggacctcgccggg
ccgctgcttgccaacctattccggatgcttttcaggaaactgacaaaggacgtgtaccgg
tacctgcagaagtgcatagagaccgggaaacaattcaatcttagtcttgcggtcaagcat
aacaccatcacgaatggtctcaaatactcgctagcgacaggcaactggggtgatcagaag
aaatctatgtcgtccaaagctggtgtatcacaggtattgaaccgctacacatacgcttct
accttatcccatcttcgtcgctgcaacacaccgctcggccgagaagggaaaatcgccaag
cctcgtcagctccacaacactcattggggtatggtttgccctgcagaaactcctgagggt
caggcttgcggtctcgtcaagaacctgtcgctgatggctacaatttccgtcggttcgatc
tctgcacccgttatcgagttcttggaagagtggggcttggagtcgctggaggagaatgcg
cattcttccacgccatgcacgaaggtcttcgtcaacggtgtctggatgggggttcatcgc
gatcccttgaatcttgtgaagactatcaagaaactccgtcgaaaggacgacatcagcccc
gaaacgtctgttgtcagggatattcgtgaaagggaactgcggatttcgacagacgctgga
cgtgtatgcagaccgctgtttatcgtcgagaaccagcagctggtcctcaagaaatcacac
atcgagaaattgcacaagcacaataccgaacctgtgcttgacgatgcgggggcgccaact
tttgatgagaatggcaagcagcgcttcttccaatatcagttcgatgagctcgtcaaggaa
ggcgtcatcgaatacttggatgcggaagaagaggagactgtgatgatctgcatgactccg
gaggacctcgagaatgcaaggttgaagcagcagggtcatgatccatcgcaggatgatcca
gacttcgatccggctgcgaggatcaagaccgggacgcaagcgcatctttggactcactgc
gagatccatccaagtatgatccttggcatatgcgctagcattattcccttcccagatcat
aatcagtcacctcgtaatacctatcaatcggccatgggcaagcaagccatggggatttat
ctgacgaacttcctcgttcgcatggacacaatggcgaacattctctactatcctcaaaaa
ccgctagcgaccacccggtctatggagtacctcaagttccgagagctgcctgccggccaa
aacgcgatcgttgccatcatgtgttacagtggatacaaccaggaagattccgtcatcatg
aatcagagttccatcgatcgaggcctattccgcagcatgtacttccgcagttacatggac
atggagaagaagagcggcatccaacagctggaggaattcgagaagccaacccgagacacc
acgcttcgcatgaagcacggtacttatgacaagctggaggacgacggcctgattgctcct
ggaacaaatgttaacggagaagatatcatcatcggcaagacagcgccgatacctccggac
agcgaagaactcggccagcggacacgaggccacacacggagagacgtttctactccatta
aagagcaccgaacaggggaccgttgatcaagtgcttattacaacaaactccgagggtcaa
aagttcgtcaaggttcgcatacgttcgactcgtattccccagatcggcgacaagttcgcg
tcccgccacggtcaaaagggtaccatcggtattacataccgccaggaggacatgccgttc
actgcggagggaatcacacccgacatcatcatcaacccccatgccatcccctcacgtatg
acaatcggacacttagtcgagtgtctgttgtccaaggtcgcgacccttattgggaatgaa
ggcgacgctactccctttaccgacttgacagtggaatctgtgtcgcagtttttgcggcag
cgtggctaccagtcccgtgggctggaggtgatgtatcacgggcacacgggccgaaagtta
caggctcagatttatcttgggccaacctactatcaacgactaaaacacatggtggacgac
aagatccactcgcgcgctcgtggtcccgtgcagattctcacgcggcaaccggtagagggc
agaagtcgcgatggcggtctccgattcggggagatggaacgggactgcatgatttcccat
ggcatcgctgcattcttgaaggaacgtctatttgaagccagtgatgcgtatcgtttgcat
gtgtgcgacatctgtggcctcacagctatcgcaaatctcaaaaagcagacgtttgaatgt
cgagcatgcaagaacaagacagaatgctcgcaactctatattccgtacgcagcgaagcta
ctcttccaggagctgcagagtatgaacattgctgcgcgtttatacaccacgtcgaccggg
cgtattcgagatgtccgagattag
DBGET
integrated database retrieval system
