Punctularia strigosozonata: PUNSTDRAFT_49022
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Entry
PUNSTDRAFT_49022 CDS
T03131
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
psq
Punctularia strigosozonata
Pathway
psq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PUNSTDRAFT_49022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psq03021
]
PUNSTDRAFT_49022
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_49022
Transcription machinery [BR:
psq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PUNSTDRAFT_49022
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PUNSTDRAFT_49022
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCHC
zf-CCCH_4
zf-CCHC_2
zf-CCHC_3
F-box_5
Motif
Other DBs
NCBI-GeneID:
18883076
NCBI-ProteinID:
XP_007379113
JGI:
49022
LinkDB
All DBs
Position
Unknown
AA seq
286 aa
AA seq
DB search
MSVTLAAGPSVLRDIVRPQFHQNNFREEVLIKNELGIKLDKDDQICRLALTPAGCPLGPL
HCPLRHTTPSPANFQPPKQLPTHPRDRERLATVCKHWLRGLCKKGDACEFLHEYNLRRMP
ECWWYAKYGYCSAGDECLYAHPKERKIECPDYRRGFCKLGPTCPRKHIRRVACQLYLSGF
CPMGPDCPRGHPKPQLPPPSAYEPPPPPANRDLGPPPPGYGRYADFDRGGPSLTGNPMVG
PPRRNLDDVMCFKCGEKGHYANTCRNRNVPGNRGGLDRSRRYGGEE
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgactctcgctgctgggccgtcggtattgagggatatcgtccgtccacagttt
caccagaacaatttccgagaggaagtgttgatcaagaatgagctcgggataaagctggac
aaagacgaccagatatgtcggctggctcttacgccagctggctgcccgctgggacctttg
cactgtcccttacgccatactactccttctcctgccaattttcaaccaccgaaacagctg
ccgacacatcctcgagatcgcgagcgtcttgctaccgtatgcaaacactggttgcgcggg
ctttgtaagaaaggtgacgcttgtgaatttttgcacgagtacaacctccggcgaatgccc
gagtgttggtggtatgccaaatatggttactgctcggctggcgacgaatgtctatacgca
cacccgaaggagcgcaaaatcgagtgcccggactacagaagaggattctgtaagctaggc
ccgacatgcccccgcaagcacatccggagagttgcttgtcaattatacctctcgggcttc
tgcccgatgggacctgactgtccgcgtggccacccgaaaccgcagctaccgccaccatca
gcatatgaacctccaccacctcctgccaaccgggatctcggtcctccacctccaggatac
ggtcgatatgcggattttgaccgtggtgggccatcgttgaccggaaacccgatggttggc
ccccctcgccggaacctggacgatgtcatgtgcttcaagtgtggagagaaggggcattac
gcgaatacatgtcggaaccgcaatgtcccaggcaaccgaggcgggctcgacaggtcgagg
agatatggcggagaggaatga
DBGET
integrated database retrieval system