Punctularia strigosozonata: PUNSTDRAFT_50633
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Entry
PUNSTDRAFT_50633 CDS
T03131
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
psq
Punctularia strigosozonata
Pathway
psq03022
Basal transcription factors
psq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PUNSTDRAFT_50633
09124 Replication and repair
03420 Nucleotide excision repair
PUNSTDRAFT_50633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psq03021
]
PUNSTDRAFT_50633
03400 DNA repair and recombination proteins [BR:
psq03400
]
PUNSTDRAFT_50633
Transcription machinery [BR:
psq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PUNSTDRAFT_50633
DNA repair and recombination proteins [BR:
psq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PUNSTDRAFT_50633
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
ImpA_N
Motif
Other DBs
NCBI-GeneID:
18883283
NCBI-ProteinID:
XP_007381291
JGI:
50633
LinkDB
All DBs
Position
Unknown
AA seq
610 aa
AA seq
DB search
MPPPLCKANAAYRKLDGVLELTASHLQWTQRGKKAPAVRVPCVECATLSVSREAAAQVKL
KVGLVGNDAGHNFTFTSTPQTVALTERESFKRELTNIIARNKSLATSAVPSLALPGSGTP
LTASASNAPTPKPMVIPAKVPDTRTASLQRSESVVPSARGSPTPAPGPGLSQEDFRLRKK
VLLAHPELATLHRELVMTGQISEAEFWEGRQHLLASYQLSSSQKRGRPGTIVDPRPETVD
GDIKIVITPQLVHDIFEEYPVVARAYSENVPQKLTEAEFWKRYFQSKLFNAHRASIRSSA
AQHVVKDDPIFDKYLEKDDDDLEPRRLRDERVDAFIDLGATQEDHGETGNERDVTMQAGR
QRATLPLIRKFNEHSERLLKSALGDEPPSKKRRLAPDPDNAGLEDYYAQIDLEDLHDPES
ASGIALEMQDRQRYFEAKMAGADGKESEEVDIQTALRESKVSLDDWARNLTELRFDKKSG
EAALAAMTQNVAARLDTKTRKNDIPEHLFRQLTTCQTAANEFLRQFWSAIYPPPSDAPVL
SASTPAQKAAKAAKMAGYLSKTQEKVDALVRMATAEGVDPSKVEIAMNPVLNAVNHALAF
HRTRQAKTGR
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcctccaccgctctgcaaggccaacgccgcctatcggaaactcgacggcgtcctcgag
ctcactgcgtctcatctccaatggactcagcgcggcaagaaggcgcccgcggtgagggta
ccctgcgtcgagtgcgccaccttatcagtcagtagggaggccgctgcgcaagtgaagctc
aaagttggactggtcggcaacgatgcagggcacaacttcacgttcacatcgaccccgcag
actgtggcgctcaccgagcgggagtcattcaagcgggagctcacaaacataatcgcgcgc
aacaagtcgctggcgacctctgcggttccatctcttgcgctgcctgggtctgggacgccg
ttgactgcgtcggccagcaatgcaccgacaccaaaaccgatggttatacctgccaaggtg
cctgacacgcgcacggcgagcctgcagcgcagcgagagtgtcgtaccgagtgcgagagga
agcccgacccccgcacccggcccgggtcttagccaggaagatttcaggttgaggaagaag
gtgctcctggcccatccagagctcgccactttgcatcgcgagctggtcatgactgggcaa
atttcggaggctgagttttgggaaggaagacagcacctcctcgcatcctaccagctatcc
tcctcgcaaaaacgcggccggccgggcactatcgttgatccccgcccggagacggttgac
ggcgatatcaagattgtcattactcctcagctcgtgcacgacatctttgaagagtatccc
gtcgtcgctcgtgcatatagcgagaacgtgccacagaagttgactgaggcggagttttgg
aaacgctactttcagtccaagctcttcaacgcacaccgcgcctcgatccgctcctcagcg
gcacaacacgtcgtcaaggacgatccgatctttgataagtacctcgagaaggacgatgac
gacctcgagcctcgtcggctgcgtgacgagcgcgtcgacgcattcatcgacctcggtgcg
acccaagaagatcatggcgagaccggcaacgaacgcgatgtcacgatgcaagcaggccgg
cagcgcgcgacgctccctctcatacgcaagtttaacgagcattccgagcgcttgctcaag
tccgctctcggggacgagcctccctcgaagaaacgcaggttagctccagaccccgacaac
gccggactggaagactactacgcccagattgatctcgaggatttgcacgatccagagtca
gcgagcggtatcgcgctcgagatgcaggatcggcaacgctactttgaggcgaagatggcc
ggcgcggacggcaaagaatccgaagaagtagatattcaaaccgcgctaagagagtctaag
gtttcgttggacgactgggcgagaaacctgactgagctgcgattcgacaagaaatcgggc
gaagcagcactcgcggcgatgacgcagaacgtggccgcgcgattggacacgaagactcga
aaaaatgacatacctgagcacctctttcgccagttgacgacctgccagacggcggcgaat
gagttcctacggcaattctggtcggcgatctatccgccgccgtcagacgcgccggtgctc
tctgcatcgacgccggcgcagaaggcggctaaggcggctaaaatggcgggatatctatcc
aaaacgcaggagaaggtcgacgccctcgtcaggatggcgacggcagaaggtgttgacccc
tccaaggttgaaatcgctatgaaccctgttcttaacgctgtcaaccatgcgctggcattc
catcggactagacaagctaagacaggacggtag
DBGET
integrated database retrieval system
