Punctularia strigosozonata: PUNSTDRAFT_54914
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Entry
PUNSTDRAFT_54914 CDS
T03131
Name
(RefSeq) antiviral helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUNSTDRAFT_54914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_54914
03041 Spliceosome [BR:
psq03041
]
PUNSTDRAFT_54914
03009 Ribosome biogenesis [BR:
psq03009
]
PUNSTDRAFT_54914
03016 Transfer RNA biogenesis [BR:
psq03016
]
PUNSTDRAFT_54914
Enzymes [BR:
psq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PUNSTDRAFT_54914
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PUNSTDRAFT_54914
Spliceosome [BR:
psq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PUNSTDRAFT_54914
Complex C
U4/U6.U5 tri-SnRNP related factors
PUNSTDRAFT_54914
Ribosome biogenesis [BR:
psq03009
]
Eukaryotic type
Pre-60S particles
Helicases
PUNSTDRAFT_54914
Transfer RNA biogenesis [BR:
psq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PUNSTDRAFT_54914
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
18883892
NCBI-ProteinID:
XP_007387322
JGI:
54914
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MQIDRIASPDGGAKRKLDGDAPESRTAHEIPPKKPRLASPKPVVVDEFETEAKREVDASA
GLTGASVEEGSRLELRHQVRHQVAVPPGYPYVPISQHVPPAKPARTYKFTLDPFQQVSVH
AIQRNESVLVSAHTSAGKTVVAEYAIAQCLERKQRVIYTSPIKALSNQKYREMLAEFGDV
GLMTGDVTINPSATCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDKERGVVWEET
IILLPHSVRYVFLSATIPNAMQFAEWIAKSHEQPCHVVYTDFRPTPLQHYLFPAGGEGIY
LVVNEKGEFREDNFSKAMGTLAEKQGEDPADPKSGGKGRKGKTKKGGDKKGPSDISKIIK
MIMLKNYNPVIIFAFSKRECEALALQLSKQEFNTQDEQDLVTNIFNNAIENLAPADRSLP
QITNLLPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKALFATETFSIGLNMPAKTVVFT
ATRKFDGREFRDLSSGEYIQMSGRAGRRGLDDRGVVIMMCDEKLEPAAAKNMIKGEADRL
DSAFHLGYNMVLNLMKVEGISPEFMLERCFFQFQNQAGVPMLEDQLKKEEEARDAIVVED
EKAIAEYYQCRQQLDQMSADFREVVTHPTYSLPFLQPGRLVKVKHKDLDFGWGIIINYQK
RLPPKNRPMPKSEEIPPHEQYILDVLLNCATGSASSLPKDKSSVTTSTPGGIRPCKSGEK
SEALVVPVLLSTIDAISHLRIYLPKDLRQPQARETTWKSVLEVQKRFPDGIPLLDPVENM
KIDDAKFMELIKKIDTLEKKMFSSPLHKDPRLPQLYSAYAKKEEARERIRALKKRIQATN
DVLQLEELKCRKRVLRRLGFTNSADIVDMKGRVACEISTGDELLLTELIFNGVFNPLSPE
QCAGLLSCFVFTEKSEQVTKLKEELAAPLRVMQEIARRIAKVSQESKLPVVEDEYVSSFK
VELMDAVVQWCRGASFSDILKLTDQFEGSLIRVFRRLQELLRQMNQAAKVIGNTELQEKF
DKASEMLERPNSVIFCSSLYL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattgatcggatcgcttctccggacgggggcgcgaaacgcaaactagacggcgat
gcaccggaatcccggacggcccatgagataccgccgaaaaaaccacgtctagcgtctcca
aagccggtggtcgtagacgagttcgagacggaggcgaagcgcgaggttgacgccagtgcg
gggttgacgggtgctagtgttgaggagggatcgcggcttgagttgcggcaccaagtcagg
catcaagttgctgtgcccccaggatatccctacgttcccatttcacaacatgtcccaccc
gccaagcctgcccggacctacaaattcacgctggatcctttccagcaggtctcggtgcac
gcgatacagagaaacgagagtgtactcgtctcggcccacactagtgcggggaagacagtt
gttgccgagtacgcgatcgcacagtgtttggagaggaagcagagggttatatacaccagt
cctataaaggcgctcagtaaccagaaataccgtgaaatgcttgcggaatttggggacgtg
gggcttatgacgggcgacgtgaccatcaatccttccgcaacctgtcttgttatgaccacc
gaaattctgcgttcgatgctttaccgtggctccgagataatgcgtgaagtagcatgggtc
atcttcgacgaaattcactatatgcgcgacaaggagcgaggtgtcgtctgggaggaaacg
atcatcttacttccgcactccgtccgatatgttttcctatccgccacgataccgaatgcg
atgcagttcgctgagtggattgcgaagagccatgaacaaccctgtcacgtagtctacaca
gacttccgacctacaccgttacaacactacctattcccggcgggcggcgagggcatatat
ctcgtggtgaacgagaaaggcgagttcagggaggacaattttagcaaggccatgggcacg
ttggccgaaaagcagggcgaggatccagcagacccgaagagtggcggaaaaggcaggaag
ggaaagacgaagaaaggtggagacaagaaagggccttcggatatctcaaagatcatcaag
atgatcatgctgaagaactacaacccggtcatcatcttcgcattcagcaagcgcgaatgt
gaggctctcgcgctgcagctgagcaaacaggagttcaacacccaggacgagcaggaccta
gtgacaaatatcttcaataacgccatcgagaaccttgcgcccgccgatcgctcccttccg
cagatcaccaatttattacctttgctcaagcgaggaatcggtatccatcacggaggcctg
ttgcccatcctcaaggaagtgattgagattctctttcaagagggtctgatcaaggcgctc
ttcgccaccgaaacgttctccatcggcttgaacatgcccgcgaagacggtcgttttcacc
gcaacacgcaagttcgacgggcgtgaatttcgggatttgtcgtctggagagtatatccaa
atgtcgggtcgcgcgggtcgacgaggtctcgacgatcgcggtgtggtcatcatgatgtgc
gacgagaagctcgagcctgcggcggcgaagaacatgatcaaaggcgaggccgacaggctc
gattcggcgttccatctggggtacaacatggtgctgaacttgatgaaggtcgagggcatc
agcccggagttcatgctcgagcggtgtttcttccaattccagaaccaggcaggtgttccg
atgttggaagatcaactgaagaaggaagaagaagcgagagacgcaattgtggtggaggat
gagaaggccattgccgaatactaccagtgtaggcagcagcttgaccagatgtcagccgac
ttccgggaggtagtcacgcatcctacgtacagtctaccattcctccagcctgggcgattg
gtcaaggtcaaacacaaagacctcgatttcggttggggaatcatcataaactatcaaaag
cgtctcccgcccaagaaccgaccaatgcccaaatccgaagaaattcctccgcacgagcag
tacatcctggacgtgcttctcaattgcgctactggctctgcctcctccctccctaaagac
aagtcctccgtcaccacctctactcccggaggaattcggccctgtaaatccggcgagaag
agtgaagcgctcgttgtgcccgtcctcctcagcaccatcgacgcgattagccacttgcgc
atatacctaccaaaggacttacgccagcctcaggcaagggagaccacttggaaaagcgtg
ttggaggtgcagaagcggtttccagacggtatcccgctgctggatccagtggagaacatg
aagattgacgacgccaagttcatggaactcatcaagaaaatcgacacgctcgagaaaaag
atgttttcaagcccactccacaaggatccgcggttaccccagctctactcggcgtatgcc
aagaaggaggaagcccgagagcggatacgtgccctcaagaagcgcatacaggcgacgaac
gacgtgctgcaactggaggagctcaagtgccgcaaacgggtgctgcgcaggctagggttc
acgaactcggccgatatcgtggacatgaaaggacgtgttgcttgcgagatcagcactggg
gacgagttactcctgacggagctcatcttcaacggtgtcttcaacccgctgtctcctgag
cagtgcgccggactgctcagctgttttgtcttcactgaaaagagcgaacaagtgacgaag
ttgaaggaagagttggccgcgccgttgcgtgtcatgcaggagatcgcgagacggatagct
aaagtgtcacaagagtccaagcttcccgtggtcgaagacgaatacgtttcttccttcaag
gtcgagctaatggatgccgtagtgcagtggtgccggggcgcgtcgttctcggacatcctg
aagctaacggaccaattcgaaggcagcttgatccgagtgttcaggcgcctacaggagctg
ctgcgccagatgaaccaggccgccaaggtcatcgggaacaccgagctccaagaaaagttc
gacaaggcatccgagatgctcgaacgcccgaattcagtcatattctgctcgtcattgtat
ttgtag
DBGET
integrated database retrieval system
