Punctularia strigosozonata: PUNSTDRAFT_63109
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Entry
PUNSTDRAFT_63109 CDS
T03131
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
psq
Punctularia strigosozonata
Pathway
psq03018
RNA degradation
psq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PUNSTDRAFT_63109
09123 Folding, sorting and degradation
03018 RNA degradation
PUNSTDRAFT_63109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_63109
03041 Spliceosome [BR:
psq03041
]
PUNSTDRAFT_63109
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PUNSTDRAFT_63109
mRNA degradation factors
5'-3' decay
Lsm complex
PUNSTDRAFT_63109
Spliceosome [BR:
psq03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PUNSTDRAFT_63109
Complex C
U2 snRNP components
PUNSTDRAFT_63109
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
18884640
NCBI-ProteinID:
XP_007381099
JGI:
63109
LinkDB
All DBs
Position
Unknown
AA seq
114 aa
AA seq
DB search
LIFSVFKTLTDQRVTVELKNDLCITGTLKSVDQFLNIRLDGISVLDEARHPHMMAVKNCF
IRGSVVRYVQLPAEHVDTQLLEDATRRGASRCVFEFNPHSYRYSVAEASNQTKR
NT seq
345 nt
NT seq
+upstream
nt +downstream
nt
ttgattttctccgtcttcaagacattgaccgaccaacgagtgactgttgaactgaagaat
gatctgtgcatcaccggcactctaaaatccgttgaccagttcttgaacatccgtttggac
ggaatatcagtgttggatgaggcgcggcatccccacatgatggctgtgaagaactgtttc
atccggggctccgtggtgcgatatgttcagctacctgccgaacacgtcgatacacagctt
ctcgaagatgcgacgcggcgtggtgcgtcacgatgtgtgttcgaattcaatcctcactct
tatcgttattcggtcgcagaggccagcaaccaaacgaaacgatga
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