Punctularia strigosozonata: PUNSTDRAFT_66135
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Entry
PUNSTDRAFT_66135 CDS
T03131
Name
(RefSeq) exosome complex exonuclease rrp4
KO
K03679
exosome complex component RRP4
Organism
psq
Punctularia strigosozonata
Pathway
psq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PUNSTDRAFT_66135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_66135
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PUNSTDRAFT_66135
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PUNSTDRAFT_66135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
DUF5949
Sda
Motif
Other DBs
NCBI-GeneID:
18884910
NCBI-ProteinID:
XP_007382711
JGI:
66135
LinkDB
All DBs
Position
Unknown
AA seq
285 aa
AA seq
DB search
MDLDDEELLDAFKLTYPGDSLTSTQAFMRGHGTYVAQDEVIASVAGPVERVNRLITVRAL
RSRYNPEVGDLVIGRITDVQPKRWKVDANSRQDAVLMLSSVNLPGGIQRRKVESDELQMR
SFFEEGDLLVAEVQAFFSDGAMSLHTRSLRYGKLRNGQLVSIPPILVRRLKSQFLTLPCG
VDLILGLNGYIWVSKHIKANDQEGEEGFDAQAVYSNQNDHIDQATRLAISRVTNIIHILV
AHFIPLTDTILLEAYEWALEQVGSARDLLQDDIGESLVAATSSRP
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggacctggatgacgaggagctcctcgatgcattcaaactcacgtatcccggagattct
ctcacatccacccaggcattcatgcgtggtcatggcacttacgtcgcacaagacgaggtg
attgcttccgtcgctggaccggtcgagcgggtgaaccgactcatcaccgtccgcgcgctt
cgctcaagatataatcctgaagtaggggacttggtcatcggtagaattacggatgtacag
cccaagcgatggaaggtagatgccaactcgcgtcaagacgcagtactcatgctatcgtcg
gtcaacctccccggcggcattcaacgacgtaaagtagagagcgacgagttgcaaatgcgc
agcttcttcgaggagggtgatctgttggttgccgaagtgcaagcttttttctcagacgga
gcgatgtcactccacactcggtcgctgagatacggcaagttacggaacggacagctggtt
tcgataccccccattctcgtgcggcggctaaaatcgcagtttctgaccctcccctgcggg
gttgatctgattctgggcctgaacggatacatctgggtaagcaaacacatcaaggccaac
gaccaggagggcgaagaaggttttgacgcgcaagctgtgtattccaatcaaaatgatcat
atcgaccaagcaactcggctggccatctcgcgagttactaatataatccatatcctagtc
gctcatttcattccgttgacggacactatactgctggaagcctatgaatgggcattggaa
caggtgggttctgcgagggatttgctacaagacgatatcggggaatccctcgtggccgca
acttcctcgcggccgtga
DBGET
integrated database retrieval system
