Punctularia strigosozonata: PUNSTDRAFT_82602
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Entry
PUNSTDRAFT_82602 CDS
T03131
Name
(RefSeq) histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03082
ATP-dependent chromatin remodeling
psq03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PUNSTDRAFT_82602
03083 Polycomb repressive complex
PUNSTDRAFT_82602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psq03036
]
PUNSTDRAFT_82602
Enzymes [BR:
psq01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
PUNSTDRAFT_82602
Chromosome and associated proteins [BR:
psq03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
PUNSTDRAFT_82602
HDAC complexes
Sin3A-HDAC complex
PUNSTDRAFT_82602
BRAF-HDAC complex
PUNSTDRAFT_82602
REST complex
PUNSTDRAFT_82602
SHIP complex
PUNSTDRAFT_82602
MiDAC complex
PUNSTDRAFT_82602
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
PUNSTDRAFT_82602
Heterochromatin formation proteins
Other heterochromatin formation proteins
PUNSTDRAFT_82602
Chromatin remodeling factors
NuRD complex
PUNSTDRAFT_82602
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
18886059
NCBI-ProteinID:
XP_007380614
JGI:
82602
LinkDB
All DBs
Position
Unknown
AA seq
517 aa
AA seq
DB search
MSKRRVAYYYDPDVGAYTYGLGHCMKPHRIRIAHELVTAYGMLDKMHILKPSRCPPEKMT
AFHTDEYIHFLSRVTPEKERELTYDGTRFLVGYDNPAFEGVFEFCSISAGGSLAAAERIT
SDSADIAVNWAGGLHHAKKREASGFCYINDIVLCILELLRFFPRVLYIDIDCHHGDGVEE
AFYTTDRVMTCSFHKYGDFFPGTGTQNDKGTGKGKNYTVNIPLKDGITDESYKSIFEPVI
TRILEVYRPSVVVLQCGADSLSGDKLGCFNLSMHGHANCVQFMRKQNIPTVLLGGGGYTV
KNVAKTWAYETACALGIENEIDQTAMPWNEYFDWFGPRYRLEVATSNMDDVNVKDRSLYR
VRDKALQQLAELEHAPSVAMHDVPRESVAEHLGVRKEEDDDARDELDERIARTARAVHAM
DSSDPESDDSDTSRHSRRDTRSRRANRKHMSILTNQYFDLPQYEAEDLFVPDGSKARRKF
FGQSPTWAIPDVGIESTTRVPVEDLHDLSEGGSMLID
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaagggtggcgtactactacgatcctgatgtcggggcgtatacctacgga
ttgggacactgcatgaaacctcacaggatacggattgcacacgaactggtcacggcttat
ggcatgttggacaagatgcacatattgaaaccgtctcgttgtcctcccgagaagatgacc
gcattccacaccgatgaatacattcattttctgagccgcgtcacccctgaaaaggaacga
gagctcacgtacgacggaacaagattccttgtggggtacgacaatccggcgttcgagggg
gtattcgagttctgctcaatatcggcgggagggtctcttgccgccgccgaacgtataacc
tccgattcagccgacatcgctgtcaattgggctggcggccttcatcatgcgaagaaacgc
gaagcgtctggtttctgctacatcaacgacatcgtcctttgcattctggaacttctccgc
ttctttcctcgcgtactctacatcgacatagactgccaccacggggacggagtagaagag
gcgttctacacgacggaccgtgtcatgacttgcagcttccacaagtatggtgacttcttt
cctgggacaggtacccagaatgataaaggcacgggcaaagggaagaattacacagtcaac
atcccactaaaggacggtatcaccgacgagtcatacaaaagtatatttgagcctgtgatc
accagaattcttgaagtctaccgaccttccgttgttgtcttgcaatgcggggcagactcc
ctatcaggagacaagctgggttgctttaacctgtccatgcatggccatgcgaactgtgtt
cagttcatgcgcaagcagaacattccgacagtcctcctcggaggtggtggttacaccgta
aagaacgtcgcgaaaacatgggcatatgaaaccgcatgcgccttggggatcgagaatgag
attgaccaaacggcgatgccttggaatgaatattttgactggttcggccctcgttatcgg
cttgaggtagcgacgagcaatatggacgacgtcaacgtcaaagatagatccttatacaga
gtaagggacaaagctttgcaacaactagcggagctcgagcacgcaccatccgttgcgatg
catgacgtgccccgagaatctgtcgctgaacacctgggagtacgcaaagaagaggacgac
gatgcgcgcgacgagcttgacgaacgaattgcccgaacggctcgggccgtgcatgccatg
gattctagtgacccggagtcagacgactcagatacctctcgccactcccgtcgtgatacc
agatcacgacgagcgaaccggaaacacatgagtatcttgaccaaccagtattttgacctg
cctcagtacgaggctgaagacttgttcgttcccgatggctcgaaggccaggcgcaaattt
tttggacagtcaccgacctgggcaattcctgatgtagggatcgagtcaactacaagagtc
cccgtggaagatttgcatgatttatcggagggaggttcgatgttaattgattga
DBGET
integrated database retrieval system
