Punctularia strigosozonata: PUNSTDRAFT_84460
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Entry
PUNSTDRAFT_84460 CDS
T03131
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
psq
Punctularia strigosozonata
Pathway
psq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PUNSTDRAFT_84460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psq03021
]
PUNSTDRAFT_84460
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_84460
Transcription machinery [BR:
psq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PUNSTDRAFT_84460
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PUNSTDRAFT_84460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
18886138
NCBI-ProteinID:
XP_007381934
JGI:
84460
LinkDB
All DBs
Position
Unknown
AA seq
641 aa
AA seq
DB search
MSVYPPPPHSYGQMGYPTSYAQRGRTVPAPQGAYGVPQPGPSHPVFYDPNSFRRDYTSRL
AELTINSRPIIQSLSMIAQEYSRWAEIVAQCLEAHIRRVPPWMKLPAFYLLDAISKNVYD
PYARFFTPFVIGLFLETYHQVDQPTRSKMEEMLLTWRTGGPHGKELFGIGPQVAIERGIW
GNDSNFGQPQAAPISRQQVLSELDFTLGQKERILQANPYDTNAQNQVNVLRQLQSLVNVG
VSQGELQQILTQLRTLARTSVPSHVPPPPVPNAYPPPVASSSTAPYPYQSQQPPYASAPP
QQMYQRSHEYSSVLSNPPVAPLPAPSTGNTSSAPNLEGLFSALVKAGVVPPSTGTPVGAG
AIAKAEETKLDIADPEREASRRYRKQILKHKIKLTSAEITKQRAPIVEILYESLPSQCKQ
CGVRFADDTLGKKALEDHLDIHFRQNRKASQNVGRGHSRSWFISIEDWIRDAENWKGKRP
MDGSKRLTARESAAAEAAKLDSELRAQFVVVPPGDEAKTFSCPICKENLKSEFLEDDEEW
VWRNAVKKDDRIFHATCHAEAASSSTLAARLRTETSGSGRSRSGTPETSSSRASPGKKSE
VARLSRSPDSRLAGTKRKVESRDSVLDGRGTPPMKKVALSS
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctaccccccgccgccccattcctatggtcagatgggttatcctacgagctac
gcacagcgcggacgcactgtacccgctcctcaaggggcctacggcgtaccgcaaccagga
ccatcgcatcccgtcttttacgatcccaacagcttcaggagggactatacctcccgacta
gcagaactcaccatcaactctaggcccatcatccagtcgttgtcgatgatcgcgcaagaa
tactctcgttgggcagaaatcgttgcgcaatgcctcgaggcgcacatacgaagggtaccg
ccatggatgaagttacccgccttttacctcctcgacgctatatccaagaatgtttacgat
ccctatgcgcggttttttacgcccttcgtcattggactcttcctcgaaacttatcatcag
gtggatcagccaacgcgcagcaagatggaggagatgctcctgacatggagaacgggaggg
cctcatggcaaggaactatttggcataggacctcaagttgccatcgaacgcgggatttgg
ggcaacgactcgaatttcggccaacctcaagcggcgcctatttcaagacagcaggttctt
agcgaactggacttcacgctaggccagaaggagcggatcctgcaggcaaacccgtacgac
actaatgctcaaaaccaagtgaatgtgttgcggcagttgcagtcacttgtgaatgttggt
gtttcccagggtgaactgcaacaaatccttacgcaactccgcacgcttgcacgcacgtcc
gttccttcgcatgtgccaccacctcctgttccgaatgcgtaccctcctccggtagcgtcg
tcttcgactgcaccctacccctatcagtcgcagcagcctccctatgcttccgcacccccg
caacagatgtaccagcgatcgcacgagtattcatcggtactcagtaatccgcctgtagct
ccacttccagccccttccactggtaatacctcatctgcacccaatttagaaggtctgttt
agtgccctcgtcaaagccggtgtagtgccacccagcactgggacgcctgtcggcgctggt
gcgattgcgaaggctgaagagaccaagttggacatcgccgaccccgaacgagaagcctcc
cgtcgttataggaagcagatcctcaaacacaagatcaaattgactagcgccgagattacg
aagcaaagggctcccatcgtcgaaatcttgtatgaaagtctcccctcgcaatgtaagcag
tgcggagtgaggtttgcagacgacacattggggaaaaaggcgttggaagaccatttagac
atacatttccggcagaaccggaaagccagtcagaacgttgggcgcggtcatagtcgcagc
tggttcattagcatagaggactggatacgtgatgcagaaaattggaaaggcaagcgacca
atggatggttccaagcggctgactgcgagggagtcagctgctgcggaagccgctaagctc
gactctgaactgcgagctcaatttgtggtcgtgcctccgggtgatgaggccaagacgttc
tcgtgtccgatatgtaaggagaacctgaagtccgagtttcttgaggatgacgaggagtgg
gtgtggcgaaacgccgtcaagaaggacgataggatcttccatgcgacttgtcatgcggaa
gccgcatcgtccagcacgctcgccgcgaggttacggacggaaacatcaggtagtggacga
agtcgttctggaactccagagacttcgtcatcgcgcgcatcaccaggcaagaagtctgaa
gtggcgaggctatcgcggtctcctgactcacgactggcaggaactaagcgcaaggtagaa
tcccgggactctgtactagacggacgcggaacgccgccgatgaagaaagtggcgctctct
tcttga
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