Punctularia strigosozonata: PUNSTDRAFT_94384
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Entry
PUNSTDRAFT_94384 CDS
T03131
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
psq
Punctularia strigosozonata
Pathway
psq03013
Nucleocytoplasmic transport
psq03015
mRNA surveillance pathway
psq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PUNSTDRAFT_94384
09122 Translation
03013 Nucleocytoplasmic transport
PUNSTDRAFT_94384
03015 mRNA surveillance pathway
PUNSTDRAFT_94384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psq03019
]
PUNSTDRAFT_94384
03041 Spliceosome [BR:
psq03041
]
PUNSTDRAFT_94384
Enzymes [BR:
psq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PUNSTDRAFT_94384
Messenger RNA biogenesis [BR:
psq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PUNSTDRAFT_94384
Spliceosome [BR:
psq03041
]
Complex C
Other components
EJC/TREX
PUNSTDRAFT_94384
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PUNSTDRAFT_94384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
18886620
NCBI-ProteinID:
XP_007378277
JGI:
94384
LinkDB
All DBs
Position
Unknown
AA seq
434 aa
AA seq
DB search
MSANDNEELIDYEDEADVGTGAVASNGVAVAGATADGDDKDKKNFSGIHSTGFRDFLLKP
ELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGQV
SVLVLCHTRELAFQIKNEYARFAKYMPDVRVATFFGGVPVTKDAETLRDKAKCPHIVVAT
PGRLNALVRDKTLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLS
KEIRVTCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEENQKNRKLNELLDTLEFNQVVI
FVKSVARCIELDKLLVSCNFPSISIHSGLDQVERINRYTAFKAFEKRILVATDIFGRGID
VERVNIVINYDSPADADSYLHRVGRAGRFGTKGLAITFVSSESDTQVMAAIQSRFEVAVP
ELPDHIDPASYMTS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctaacgacaacgaggaactcatcgactacgaggacgaggctgacgtcggaacc
ggcgcggtcgcatccaacggtgtcgcggtggctggcgctacggccgacggggacgacaag
gacaagaaaaacttctctggcatccactcaacgggcttccgtgacttcttgttaaagccg
gagctgctacgcgccatcagtgacctcggtttcgaacacccctccgaagtgcagcaagaa
tgtattccgcaagcggtgctcggcatggacgtgctgtgccaggccaagtctggtcacgga
aagaccgctgtgttcgttctggcgacgctccaacagctggagcccgtcaacggccaggtc
tccgtgctcgtgctctgccacacccgcgagctcgcgttccagatcaagaacgagtacgcg
cggttcgcgaagtacatgcccgacgtccgtgtcgcgacattcttcggcggtgtccccgtc
accaaggatgccgagaccctgcgcgataaggccaagtgcccgcacatcgtcgtcgctacc
cccggccgcctcaacgcgctcgtgagagacaagaccctcgacgccaaaaacgtcaagcac
ttcgttctggacgaatgcgacaaaatgcttgaacagctcgacatgcgccgagacgtccaa
gaaatcttccgcgccacgccccaccacaagcaagtcatgatgttcagcgcgaccctctcg
aaggaaatccgtgtcacgtgcaagaagttcatggcgaacccgctcgaaatcttcgtcgat
gatgagacgaagctgaccctccacggtcttcagcaacattacgtcaagctggaggagaac
cagaagaatcgaaagctcaacgagcttctggacaccctcgagttcaaccaggtcgtcatc
ttcgtcaagtcggtagctcgctgcatagaactcgacaagctacttgtctcgtgcaatttt
ccgagcatcagtattcactcgggtcttgaccaggtcgaacgtatcaatcgctacaccgcc
ttcaaggcgttcgagaagcgaatcctcgtcgccacggatatctttggacgtggtatcgat
gtcgagcgagttaacatcgttatcaactacgactcgcctgcggatgccgacagttatctc
catcgtgtgggtcgtgccggccgtttcggtaccaagggtctcgcgattactttcgtttca
tcagaaagtgatacgcaggtcatggcggccatccaatcgaggttcgaggtggccgtgcct
gagttgcctgaccacatcgaccccgccagctacatgacctcgtaa
DBGET
integrated database retrieval system
