Stutzerimonas stutzeri DSM 4166: PSTAA_0349
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Entry
PSTAA_0349 CDS
T01976
Name
(GenBank) ATP-dependent DNA helicase domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psr
Stutzerimonas stutzeri DSM 4166
Pathway
psr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSTAA_0349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psr03019
]
PSTAA_0349
03400 DNA repair and recombination proteins [BR:
psr03400
]
PSTAA_0349
Enzymes [BR:
psr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSTAA_0349
Messenger RNA biogenesis [BR:
psr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSTAA_0349
DNA repair and recombination proteins [BR:
psr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSTAA_0349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AEA82269
LinkDB
All DBs
Position
397280..399205
Genome browser
AA seq
641 aa
AA seq
DB search
MIEQTLRQTFGYDSLRPGQEQAIRAVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVV
SPLLALMQDQLAFLQRHGIVAGSIDSAQSREQASETMARAKSGELKILMISVERLKNERF
RHFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQVLLLTATATQPAIAD
MQAKFSIAADDVVTTGFYRPNLNLLVEPVSGFNKQRRLVEWLTGKAGQPTIVYVTQQKTA
EQIAEHLAQRGFPASAYHAGMAHEQRESIQRRFMAGELNCIVATIAFGMGIDKADIRNVV
HYDLPKSVENYSQEIGRAGRDGNASDCLVLANRDSLSVLQNFVYGDTPEREGIRCVLDEL
LQAGAGGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRFKYLLEPEA
LVAKFDGERRQFVEAIVHTSARARTWCTLDFEALYGQHGADRARVVKALEYFQEKGWIEL
ESKQMTEVYALLDTRFDAEALSRELHAYFKEHEASEIARIDNMLALFESAECLSQRLAAY
FGDRQAPQRCGHCSVCNGQVAKLPEPPTLAPLEQIDLAARCAEFSERYAQLKGGAPSAEC
LTRFLCGISVPVFTKLKARQLPGFASLEAYPYAEVRARLAV
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacagaccctcaggcagacgtttggctacgacagcctgcgtccgggccaggaa
caggccattcgcgccgtagtggcggggcgctctgcggcggcgatctttcctaccggctcg
ggcaaatccctgtgctaccagctgccggcgctgctgttgccgcatctcaccctggtggtc
tcgccgttgctggcgttgatgcaggatcagctggcctttctgcagcggcatggcatcgtc
gccggcagcatcgactcggcgcagagccgcgagcaggccagcgaaaccatggcgcgggcc
aagtccggcgaactgaagatcctgatgatctcggtggagcgactgaagaacgagcgtttc
cgccacttcatcagtcaggtgccgatctcgctgctggtggtggacgaggcgcactgtatt
tccgagtgggggcacaacttccgtccggattacctcaagcttcccgactatcagcgccag
ttcaatattccccaggtactgctgctgactgccacggcgacgcaaccggcgatcgccgac
atgcaggccaaattctcgattgcagcggatgacgtggtgaccaccggcttctaccggccc
aatctcaatctgctggtggagccggtcagcggcttcaacaagcagcgccggctggtggaa
tggctgacgggcaaggcggggcaaccgaccatcgtttatgtcacccagcagaagaccgcc
gagcagattgccgaacacctggcgcagcgggggtttccggccagcgcctaccacgcgggc
atggcacacgagcagcgtgaatcgatccagcgtcgcttcatggccggcgagctgaactgc
atcgtcgctaccatcgccttcggcatgggcatcgacaaggccgatatccgcaacgtggtg
cactacgacctgcccaagtcggtggaaaattacagtcaggaaattggtcgggcagggcgc
gacggcaacgcttcggattgcctggtgctggccaatcgcgacagcctcagcgtgttgcag
aacttcgtctacggcgatacgccggaacgcgagggcatccgctgcgtgctcgacgagctg
ctgcaggccggcgccggcgggcaatgggagctgatgctcaaccagctatccgatcagagc
aacatccgccagctgccgctgaaaaccctgctggtgcagctggagctgcgcggcatcatc
gcaccgcgttttgcctacttcgccgagtaccgcttcaagtacctgctcgagcccgaggcg
ctggtagcgaagttcgacggcgagcggcgacagttcgtcgaagccatcgtgcacacctcg
gcgcgggcgcgaacctggtgcacgctggatttcgaagcgctttacgggcagcacggcgcc
gaccgcgcgcgggtggtaaaggcgctggaatatttccaggagaagggctggatcgagctg
gagagcaagcagatgaccgaggtctacgcgctgctcgacacgcgcttcgatgccgaggct
ctgagccgcgagctgcacgcctacttcaaggagcacgaagccagcgagatcgcccgcatc
gacaacatgctggccctgttcgaatccgccgaatgcctgagccagcgactggccgcctat
ttcggtgatcgccaggcaccacagcgctgtgggcattgctcggtctgcaacggacaggtc
gcgaagctgccggaaccgccgacactggcgccgctggagcagatcgacctggccgcccgc
tgcgcagagttcagtgagcgttacgcgcagctcaagggcggtgcgccgagcgccgagtgc
ctgacgcgctttctctgcggcatcagcgtgccggtgttcaccaagctcaaggcgcgccag
ctccccggcttcgcctcgctggaggcctatccctatgccgaggttcgtgcgcgcttggcg
gtttag
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