Stutzerimonas stutzeri DSM 4166: PSTAA_1136
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Entry
PSTAA_1136 CDS
T01976
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psr
Stutzerimonas stutzeri DSM 4166
Pathway
psr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSTAA_1136 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psr03019
]
PSTAA_1136 (rhlB)
Enzymes [BR:
psr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSTAA_1136 (rhlB)
Messenger RNA biogenesis [BR:
psr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSTAA_1136 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AEA83046
LinkDB
All DBs
Position
complement(1220529..1221959)
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AA seq
476 aa
AA seq
DB search
MLKALKKIFGKAPDERAGIPTGAPSAATERQPDPVTQPGATDETQSKSQPSQRSADKPRR
QRSSKPPKPAAPAWRLEDFVVEPAEGKTRFHDFKLAPELMHAIHDLGFPYCTPIQAQVLG
YTLKGRDAIGRAQTGTGKTAAFLISTITQLLETPPPKERYMGEPRALIIAPTRELVVQIA
NDALDLTKYTGLNVMSFVGGMDFDKQLKQLESRYCDILVATPGRLLDFNQRGEVHLDMVE
VMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAQQWTTNPAVVE
IEPENVASDTVEQHVYAVAGSDKYKLLYNLITQNDWTRVMVFANRKDEVRRIEERLTKDG
ISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDY
VHRIGRTGRAGTSGTSISFAGEDDAFALPPIEALIGRKIQCEMPPAELLAPVPRSR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaaaatctttggcaaggccccggacgagcgggccggcataccc
accggcgcgccatctgccgctaccgaacggcaacccgaccccgtgacgcagccgggcgcg
acggacgaaacccagtccaagtcgcaaccctcccagcgcagcgccgacaaaccacgccgc
cagcgcagcagcaaaccgccgaaacccgccgcgccggcctggaggctggaagacttcgtg
gtcgagccggccgaaggcaagacccgctttcatgacttcaagctcgcaccggagctgatg
cacgcgatccatgacctgggcttcccctattgcacaccgatccaggctcaggtgctgggc
tacacgctcaagggccgcgatgccatcggccgtgcacagaccggcacaggcaagacggcg
gccttcctgatctcgaccatcacccagctgctggaaacgccaccgcccaaggaacgctac
atgggcgagccgcgtgccctgatcatcgctccgactcgcgaactggtggtgcagatcgcc
aacgatgcgctggacctgactaagtacaccggactcaacgtgatgagctttgtcggcggc
atggatttcgacaagcagctcaagcagctggagtcgcgctactgcgacatcctggtggct
acccccggccggttgctggacttcaaccagcgcggcgaagtccaccttgacatggtcgag
gtgatggttctcgacgaagccgaccgtatgctcgacatgggcttcatcccgcaggtccgc
cagatcatcaggcagacgccacccaagagcgaacgtcagaccctgctcttttccgccacc
ttcaccgacgacgtgatgaacctggcgcagcagtggacgaccaaccccgccgtggtcgag
atcgaaccggagaacgtggccagcgataccgtcgagcagcacgtttatgccgtggccggc
agcgacaagtacaagctgctgtacaacctgatcacccagaacgactggacgcgggtaatg
gtcttcgccaatcgcaaggacgaagtacgacgcatcgaagagcgtctgaccaaggatggc
atcagtgcagcgcagatgtccggcgacgtcccgcagcacaagcgcatccgcacgctggag
ggctttcgcgagggcaagattcgcgtgctggtcgccaccgacgtcgccggtcgcggcatc
cacgtcgacggcatcagccatgtgatcaatttcaccctgcctgaagacccggacgattac
gtccatcgcatcggtcgcaccggccgcgccggcaccagcggcacctccatcagctttgcc
ggtgaggacgatgccttcgccctgccccccatcgaggcgctgatcggccgcaagattcag
tgcgaaatgccaccggcggaactgctcgccccggtgccgcgttcccgctga
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