Stutzerimonas stutzeri DSM 4166: PSTAA_2752
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Entry
PSTAA_2752 CDS
T01976
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psr
Stutzerimonas stutzeri DSM 4166
Pathway
psr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSTAA_2752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psr03019
]
PSTAA_2752
03009 Ribosome biogenesis [BR:
psr03009
]
PSTAA_2752
Enzymes [BR:
psr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSTAA_2752
Messenger RNA biogenesis [BR:
psr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSTAA_2752
Ribosome biogenesis [BR:
psr03009
]
Prokaryotic type
rRNA processing factors
PSTAA_2752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AEA84631
LinkDB
All DBs
Position
2939730..2942888
Genome browser
AA seq
1052 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFSKSPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLNIPADMGLIVRTAGLGRSSEELQCDLD
YLLQLWTAVKDASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQ
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINS
ARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREA
LEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRL
IEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETPHFEVQ
RLRDDSPEIIAGQASYEMSQSEAEEVQPVSSTRTLVRQEAAVKTAPQRSAPATSAAPPPA
EAPVATPAQEPSLFKGLIKSLVGLFAGKAEEPQAAAQVEKKPASARPQRNDERRSGRQQN
RRRDSRNGRDEERKPREERQPREERQPREERQAREERQPREERQPRPPREERKPREQAEA
AEAQPRRERAPREERKPREERKRELRAPIDEAPTVAQEEQAERQPREPRAPREERKPRAE
QQAAPADELLQQALEIGETEDAQEANEGAEGNDSERPRRRSRGQRRRSNRRERQRDANGN
EIEDADESNAPVKTEEIAIAATAAALAANTADTEAAPQATLAEDTVIQTSSEGVATIVEH
APVAQPAASEGIDERKASEEPAPAEAPTDIPVQPAEVAPQEVAQVAQPEAAPQPAPEPIV
EKPEAAPAATPTLTPSGRAPNDPREVRRRQREAERLAKEAAEAEAKAAAEQPLASPEIVA
SEPVVDTQPEQPVAQQAADAQPEQTIEPVPAQQQPAVEQQSTELVAEQVPADDASEHKPV
APAFDEAPQPAAEESEQPAQGTEPDNREKPQG
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgctaattaacgcaactcagcccgaagagttgcgtgtcgcactggtcgacggccaacgc
ctgtttgatctggacatcgaatccggtgcccgcgaacagaaaaaagccaacatctacaag
ggcaagatcacccgcgtcgagcccagtctcgaagctgccttcgttgacttcggtgccgaa
cggcacggcttcctccccctcaaggaaatctcccgcgagtacttcagcaaatcgcctgaa
ggccgcgtgaacatcaaagacgtcctgcgcgaaggccaggaagtcatcgtccaggtcgaa
aaggaagaacgtggcaacaagggcgcagccctgaccaccttcatcagccttgccggccgc
tatctggtgctgatgccgaacaacccgcgagccggtggtatctcccgccgcatcgagggc
gaagagcgcaatgagctgcgcgaggcgctcaatggcctgaatattccagccgacatgggc
ctcatcgtacgcacggccggtctgggtcgctccagcgaagaactgcagtgcgatctcgac
tacctgctgcagctctggaccgcggtgaaagacgcctcccaggatcgcgcagcgccattc
ctgatctatcaggaatccaacgtcatcattcgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcgtcgaggcgcaggacgaggcgctgagcttcatccag
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtgccgctgttc
aaccgcttccagatcgaaagccagatcgaaacggccttccagcgtgaagtgaaactgcct
tccggcggctccatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccaccaaaggcggcgacatcgaagagaccgcactgcagaccaacctggaagcg
gccgaggagatcgcccgccagctgcgcctgcgcgacatcggcggtttgatcgtgatcgac
ttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagaaaagatgcgcgaagcg
ttggaagccgaccgcgcacgcattcaggtcggccgcatttcgcgtttcggcctgctggaa
atgtcccgccagcgcctgcgcccttccctgggcgaaaccagcggcatcgtctgcccgcgc
tgtaacggccagggcatcatccgcgacgtcgaatcgctgtcactggcgatcctgcgcctg
atcgaagaagaggccctcaaggatcgcaccgccgaagtccgcgcccgcgtgcccttccag
gtcgcggcgttcctgctcaatgaaaagcgcaacgccatcaccaagatcgaactgcgcacc
cgcgcgcgcatcttcatcctgccggacgaccacctggaaacgccgcacttcgaagttcag
cgcctgcgtgacgacagcccggagatcatcgccggccaggccagctacgaaatgagccag
agcgaggccgaagaagtccagccggtcagttcgactcgcaccctggttcgccaggaggcc
gcggtcaagaccgcaccgcagcgtagcgcacccgccaccagcgccgcgccgccgcctgcg
gaagcgcccgtggctacgcccgcgcaggaaccaagcctgttcaagggcctgatcaaatcg
ctggttggtctgttcgcgggcaaggccgaagagccccaggccgcggcgcaagtggagaag
aagccggcttccgcccgtccgcagcgcaacgacgagcgccgcagcggccgtcaacagaat
cgccgccgcgattcccgcaatgggcgtgacgaggagcgcaaaccgcgtgaagagcgtcag
ccgcgtgaagaacggcaaccccgcgaggagcgccaggctcgcgaagaacgtcagccgcgt
gaagagcgccagccacgcccgccgcgcgaggagcgcaagccccgcgagcaggcagaggcc
gctgaagcccagccacgtcgcgagcgtgctccgcgagaagagcgcaagccccgcgaagag
cgcaagcgtgaactgcgcgctccgatcgacgaagcaccgacagtagcgcaggaggagcag
gccgagcgccagccccgcgagccacgcgccccgcgcgaagagcgcaagccgcgcgccgaa
cagcaggcagcgcctgcggatgaactgctgcagcaggccctggaaatcggcgagaccgaa
gatgctcaggaagccaacgaaggcgcggaaggcaacgacagcgagcgaccacgtcgtcgc
tcccgtggtcagcgtcgtcgcagcaaccgtcgtgaacgccagcgcgatgccaacggcaac
gagatcgaagacgccgacgagagcaatgccccggtgaagaccgaggaaatcgccatcgcc
gctactgccgccgccctggccgccaacaccgccgacaccgaagccgcgccccaggcgacg
ctggccgaagacacggtgatccagaccagcagcgaaggcgtcgctacgatcgtcgaacac
gcgccagtcgcccagcctgctgcgagcgaaggcatcgacgagcgcaaagccagcgaagaa
cctgcaccagccgaggcgccgaccgatattccggtacagccggccgaggtagcgccgcaa
gaggtagcgcaggtcgcccagccggaagcagcgccccagcccgccccggagccgattgtc
gagaagcccgaagcggcaccggctgccaccccgacgctgacgccgagcggccgcgcaccg
aacgatccgcgcgaggttcgtcgccgtcaacgcgaagccgagcgcctggccaaggaggca
gctgaagccgaagccaaggccgcagcggagcaaccgctggcgagccctgagatcgtcgcc
agcgagccggtcgtggacacccagccggagcagcccgtcgctcagcaggcagcagacgct
cagcccgagcagacgatagagcctgtgcctgcccagcagcagcccgcagtggagcaacag
tcgaccgaactggttgccgagcaagtgcctgccgacgatgcaagcgagcacaagccggta
gcgccggcattcgacgaggcgcctcagcctgctgccgaggaatcggagcagcctgctcaa
ggcaccgagccggacaaccgtgagaagccgcaaggctaa
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