Pseudoalteromonas sp. R3: ELR70_01520
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Entry
ELR70_01520 CDS
T10968
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psrr Pseudoalteromonas sp. R3
Pathway
psrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELR70_01520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psrr03019
]
ELR70_01520
Enzymes [BR:
psrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ELR70_01520
Messenger RNA biogenesis [BR:
psrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ELR70_01520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZZ95912
LinkDB
All DBs
Position
2:439888..441186
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AA seq
432 aa
AA seq
DB search
MNFKSFSFPDALLQALDELNFHTLTPIQQAAIPVVRRGHDVLATAQTGTGKTAAFALPVI
HRLLEGESLESPRALILAPTRELAEQIANNCDAFCQYTPLTVQAVFGGVNVDGQTQRLSQ
GVDILVATPGRLLDLIRLGAVSLAQVKYLVLDEADRMLDMGFIADMQKVINMASEDRQLL
LFSATFPTAVKQFAKQVLREPKLVQAAKENTTAETVRHVVYPVEQKRKQELLSELIGKKN
WLQVLVFVNMKDDADQLVKELELDGISATVCHGDKSQGARRRALREFKEGKVRVLVATEV
AARGIDIDGLPRVINYDLPYLAEDYVHRIGRTGRAGNSGQAISFVAREEEQTLIHIETLI
EQKIKRYYLPGYEVANRENLIENLAKKPSHQRRKARTNRPSNQASGEARAKNRSKISNVR
QRLKGAQLKLQK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaagtctttcagttttcccgatgccttactacaggcgcttgatgaattaaat
ttccataccctgacaccgatacagcaagctgctattccagttgtaaggcgtggacacgac
gttctggcaacggcacaaaccggaacgggtaaaaccgcagcgtttgcattgcctgtgatc
caccgtctgctggagggagaatctctggaatcgccaagagcgctgatcctggctccaact
cgtgagttagctgagcaaatagccaataactgcgacgcattttgtcaatataccccttta
accgttcaggctgtctttggtggtgtgaacgtagatggtcaaacacagcgcttgtctcag
ggcgttgatatcctggttgcgacaccgggccgcttgctcgacttaattcgtttaggtgct
gtcagtctcgcccaggttaaatatctggtattggatgaagcagaccgtatgctggatatg
ggctttattgctgatatgcagaaggtcattaacatggctagcgaagacagacagctgttg
ttgttctccgcgaccttcccaacagccgtgaaacagttcgcaaagcaagtgcttcgagag
ccaaaactcgttcaggcagccaaagagaatacgaccgctgaaacggtaagacacgttgtt
tatccggttgaacaaaaacgtaagcaagagttactttcagaattaatcggcaagaaaaac
tggttgcaagtgctggttttcgtcaatatgaaggacgatgcggatcaactggtcaaggag
ctcgaattggatggtatcagtgctactgtatgtcacggtgacaagagtcagggagcgcgt
cgtcgtgcattgcgcgaatttaaagaaggtaaagtccgggtattagtggcaactgaggta
gcggctcgtggtatcgacattgatggcttgccgcgcgttattaactatgacctaccgtat
ctggctgaagactatgtacaccgtataggccgtaccggccgcgccggcaattcgggtcag
gctatttcctttgtggcgcgagaagaagagcaaacgctgatccacattgaaaccttgatt
gagcaaaagattaaacgctactatttaccaggatacgaggttgccaacagagaaaacctg
attgagaatttggccaagaaaccgtctcatcagcgtcgaaaagcacgtactaatcgccca
agcaaccaggccagtggcgaagcacgcgctaaaaatcgttctaaaattagtaatgtccgt
cagagattaaaaggcgcccagctaaaactacaaaagtaa
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