Pseudoalteromonas sp. R3: ELR70_05530
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Entry
ELR70_05530 CDS
T10968
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psrr Pseudoalteromonas sp. R3
Pathway
psrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELR70_05530 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psrr03019
]
ELR70_05530 (rhlB)
Enzymes [BR:
psrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ELR70_05530 (rhlB)
Messenger RNA biogenesis [BR:
psrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ELR70_05530 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZZ96667
UniProt:
A0A3T0VZM7
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All DBs
Position
1:147603..148889
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AA seq
428 aa
AA seq
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MTKTHLTNKKFIDFALAPEVVAGLTASGFEYCTPIQAKCMPYISEGRDIAGQAQTGTGKT
LAFLTATCHRLLQSQSDAQVAGQPRALIMAPTRELAIQIHKDAQILAPACGLKLGLVYGG
EEYEKQRSQLEKGVDILIGTTGRLIDFYKQGAYNLNNIEVVVLDEADRMFDLGFIKDIRY
LFNRMPDTQQRLNLLFSATLSYRVQELAFEHMHNPIHVQIEPDVKTGKRIQEELFHPSQE
DKIPLLLTLIEEEWPDKAIVFANTKHSCENVYEWLKNDGHRVGLLTGDVNQKKRLSILSK
FTKGELDLLVATDVAARGLHIPEVSHVLNFDLPDDCEDYVHRIGRTGRAGASGHAISFAC
EQYAYNLHEIEEYIDHAIPVSHYDKSALLDDIKAPARQQRRRNPSGQRGNRNGSNRRQGS
YQKPRPRN
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactaagacacatttgaccaataaaaaatttatcgactttgctttagcaccggaagtg
gtcgccggtttgacagcgagtggcttcgaatactgtacgccaatccaagcaaagtgcatg
ccctacatcagtgagggtcgagacattgccggtcaggcgcaaacaggtacaggtaaaacg
ctcgcgtttttaactgcgacttgtcacagactgttgcaaagccaatctgacgctcaggtt
gccggtcagccacgtgcgttgatcatggcaccgacacgagagcttgcgatccaaatccac
aaagacgcacaaatattggcgccggcgtgtgggttaaagcttggcttagtatatggtggc
gaagaatacgaaaaacaacggtcgcagttagaaaaaggggtggatatcctaatcggcacg
accggtcgcctgatcgatttctataaacaaggtgcctataaccttaataacattgaagtt
gttgtactggatgaagcggatcgcatgtttgatttgggcttcatcaaagatattcggtac
ttgtttaatcgtatgcctgatacgcagcaaaggcttaacctgctattttctgcaaccttg
tcttatcgtgtccaggagctggcatttgagcacatgcataacccgattcatgttcagata
gagccagatgtcaaaacaggaaaaaggatccaagaggagctatttcatccttcccaagag
gacaaaattcctttactgctcactctgattgaggaagagtggccagacaaggccattgta
tttgccaataccaagcacagttgtgaaaacgtctatgaatggctaaaaaatgacgggcat
cgagttggactattaaccggtgacgttaatcagaaaaagcgtttgtcgattctgtctaag
ttcactaaaggcgaactggatctgctggttgcaacggatgttgctgcacgtggtttgcac
atccctgaagtgagtcatgtactcaattttgatctgccagacgattgcgaggattacgtg
catcgtatcggtcgtactggtcgagctggtgcatcagggcatgcaattagctttgcctgt
gagcagtatgcatataacttacatgagattgaagaatacattgaccatgcaattccggtt
tctcactatgataagtcggcactactagatgacatcaaagcgccagccagacagcaaagg
cgcagaaatccatccggtcagcgcggcaatcgcaatggtagtaaccgtcgacaaggtagt
taccaaaaaccgcgtccgcgtaattaa
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