Pseudoalteromonas sp. R3: ELR70_09645
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Entry
ELR70_09645 CDS
T10968
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psrr Pseudoalteromonas sp. R3
Brite
KEGG Orthology (KO) [BR:
psrr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psrr03009
]
ELR70_09645 (rlmD)
Enzymes [BR:
psrr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ELR70_09645 (rlmD)
Ribosome biogenesis [BR:
psrr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ELR70_09645 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
TRAM
Methyltransf_11
PCMT
Methyltransf_23
Methyltransf_15
RrnaAD
PrmA
Cons_hypoth95
TehB
Motif
Other DBs
NCBI-ProteinID:
AZZ97355
LinkDB
All DBs
Position
1:1051595..1052920
Genome browser
AA seq
441 aa
AA seq
DB search
MAQIFRAGKSSKQRSKQAETIELTIDSLDHQGRGVCRHQGKVGFVDGALASERIKARIST
QKSRIFEAYTTKVLEPSVERTTPFCQYYQQCGGCSLQHLDASAQLVHKQQAVSALFDKFA
KATELPWLPPLAGPERHYRRAGRIACIYDKQNNLVRLGFRAAGSKKIIEIDHCAVMVDTF
AGGFEALRQSLNAHPELRSVSHIQFCAADNGAFVLLRHTRSISIQVKAQFAERLAAQNWE
FVWDDGKSQPEYASLPAYESAGVTFEFKLDNFIQVNRDINEQMLHRALDWLELTGDEQVL
DLFCGIGNFSLLLAKHANKVVAVEGVAASVAMARQNAHTNHIDTVSFHQFDLTQPLTEAN
WFHSSLDVLVLDPSRTGAYEVLRQLPLTQFKRVLYVSCDPVTMARDAALLLEAGFVVDKV
CLMNMFPHTGHIETMALFQRR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaatttttcgtgctggaaaatcttctaaacaacgtagtaaacaagctgaaaca
atcgagctgaccatcgactcgctggatcatcaggggcggggggtgtgcagacatcagggt
aaagtcggttttgtagacggcgcactggcctcagagcggatcaaagcacgcattagcacg
caaaaaagtcgaattttcgaagcgtataccacgaaagtgcttgaaccaagtgtggaacgg
actacgcctttttgccaatactatcagcaatgtggtggctgttcattacagcatcttgat
gccagtgctcagttggtgcacaaacagcaggcggtttcggccttatttgacaaatttgcc
aaggcaacagaactgccctggttgccacctctggcagggcccgagcgtcactatcgccgg
gcggggcgtattgcctgtatttatgacaagcaaaataacctggtcaggttaggttttcgt
gctgccgggtcaaagaaaattattgaaattgaccactgtgcggtcatggtcgataccttt
gctggtggctttgaggcattacgccagagtttaaatgcgcacccagagctgcgtagtgtc
agtcatatccagttttgtgcggcagataacggcgcatttgtgttgttgcgtcatacccgt
tcaatcagcatccaggtgaaagcgcaatttgcagagcgccttgctgctcagaactgggag
tttgtctgggatgacggtaagtcgcagcctgagtatgcgtcattgccggcttatgaaagc
gccggggtgacctttgagtttaaactcgataactttattcaggttaaccgcgatatcaat
gaacaaatgcttcacagggcgttggactggcttgaactcactggcgacgagcaagtattg
gatctgttttgtggaattggtaatttctctttattgctggcaaaacatgcaaacaaggtg
gtcgcagtcgaaggagtcgcggcgtcggttgcaatggcacgacaaaatgcgcacactaac
cacatcgacacggttagttttcatcagtttgacctcactcagccactgaccgaagccaat
tggtttcactcgtcgctggatgtattagtgctggacccttcacgtactggtgcatatgaa
gttttacgccagttaccgttgacgcaatttaaacgggttttatatgtgtcctgcgatccg
gtgactatggccagagatgcggcgctgttactggaagctggctttgtggtcgataaagtg
tgtttaatgaatatgttcccgcacactggacatatagaaaccatggcgttgtttcaaagg
aggtag
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